Variant report

Variant	rs11237001
Chromosome Location	chr11:76600510-76600511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76572318..76575156-chr11:76600227..76602502,2	K562	blood:
2	chr11:76595561..76597799-chr11:76599366..76601311,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10899309	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236978	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11236995	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237005	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237012	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12785994	0.80[EUR][1000 genomes]
rs12790535	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12791896	0.80[EUR][1000 genomes]
rs12792209	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12792893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12793219	0.98[EUR][1000 genomes]
rs12795242	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12797385	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12806029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34683571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7944465	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76573200-76601400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:76581000-76602200	Weak transcription	Primary B cells from cord blood	blood
3	chr11:76581200-76613400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:76594800-76602600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:76595400-76602800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:76596800-76600800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr11:76596800-76601000	Weak transcription	Placenta	Placenta
8	chr11:76596800-76603000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:76596800-76614600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:76597000-76601400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:76597000-76603000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:76597000-76605200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:76597400-76602400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:76597400-76603400	Weak transcription	Adipose Nuclei	Adipose
16	chr11:76597400-76611200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:76597600-76613600	Weak transcription	NHEK	skin
18	chr11:76597800-76614200	Weak transcription	HMEC	breast
19	chr11:76598200-76603200	Enhancers	Brain Substantia Nigra	brain
20	chr11:76598800-76600600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:76599000-76601800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:76599400-76600600	Enhancers	Brain Cingulate Gyrus	brain
23	chr11:76599400-76600800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:76599400-76600800	Enhancers	HUVEC	blood vessel
25	chr11:76599400-76604400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:76599600-76601000	Enhancers	Brain Hippocampus Middle	brain
27	chr11:76599600-76601400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr11:76599600-76601600	Enhancers	Brain Anterior Caudate	brain
29	chr11:76599800-76600600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:76599800-76600800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr11:76599800-76600800	Enhancers	Fetal Heart	heart
32	chr11:76599800-76600800	Genic enhancers	K562	blood
33	chr11:76599800-76603000	Enhancers	NHDF-Ad	bronchial
34	chr11:76600000-76600600	Enhancers	Fetal Intestine Small	intestine
35	chr11:76600000-76600600	Enhancers	NH-A	brain
36	chr11:76600000-76601000	Enhancers	HepG2	liver
37	chr11:76600000-76601200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:76600000-76601600	Weak transcription	Brain Angular Gyrus	brain
39	chr11:76600000-76602600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:76600200-76600800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:76600200-76601200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:76600200-76602400	Weak transcription	A549	lung
43	chr11:76600200-76602600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:76600200-76613600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:76600400-76602400	Weak transcription	Monocytes-CD14+_RO01746	blood

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