Variant report

Variant	rs12795242
Chromosome Location	chr11:76569933-76569934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76569198..76571423-chr11:76574828..76576546,2	K562	blood:
2	chr11:76566306..76569293-chr11:76569398..76571273,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10899309	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11236959	0.88[AMR][1000 genomes]
rs11236978	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236995	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11236998	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11237001	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11237005	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11237012	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12790535	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12791896	0.88[AMR][1000 genomes]
rs12792209	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12792893	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12793219	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12797385	0.82[EUR][1000 genomes]
rs12806029	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34683571	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7944465	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76562000-76571200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:76562000-76571400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:76562200-76570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:76562200-76571000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:76565400-76571400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:76566000-76571000	Weak transcription	K562	blood
9	chr11:76566000-76571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76566200-76571000	Weak transcription	NHEK	skin
11	chr11:76566600-76571200	Weak transcription	Thymus	Thymus
12	chr11:76566600-76571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:76566800-76570000	Enhancers	GM12878-XiMat	blood
14	chr11:76566800-76570000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr11:76567200-76572000	Weak transcription	Lung	lung
16	chr11:76567400-76571200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:76567600-76571200	Weak transcription	HMEC	breast
18	chr11:76567800-76571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:76567800-76571400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:76568000-76571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:76568600-76570000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:76568600-76571400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:76569000-76570000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:76569000-76571400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:76569000-76571400	Enhancers	Primary B cells from cord blood	blood
26	chr11:76569400-76571200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:76569800-76570000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:76569800-76570000	Enhancers	Placenta	Placenta
29	chr11:76569800-76571400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr11:76569800-76571400	Weak transcription	Primary B cells from peripheral blood	blood

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