Variant report

Variant	rs12797385
Chromosome Location	chr11:76645505-76645506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10899309	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11236978	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11236995	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11236998	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11237001	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11237005	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11237012	0.83[EUR][1000 genomes]
rs11237022	0.80[EUR][1000 genomes]
rs11237046	0.89[EUR][1000 genomes]
rs12363052	0.89[EUR][1000 genomes]
rs12364910	0.89[EUR][1000 genomes]
rs12790535	0.89[EUR][1000 genomes]
rs12791998	0.81[EUR][1000 genomes]
rs12792209	0.85[EUR][1000 genomes]
rs12792893	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12793219	0.83[EUR][1000 genomes]
rs12795242	0.82[EUR][1000 genomes]
rs12797610	0.89[EUR][1000 genomes]
rs12806029	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12807361	0.87[EUR][1000 genomes]
rs12807766	0.89[EUR][1000 genomes]
rs34683571	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67397059	0.89[EUR][1000 genomes]
rs7944465	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76630200-76645600	Weak transcription	Fetal Brain Female	brain
2	chr11:76631400-76645600	Weak transcription	Esophagus	oesophagus
3	chr11:76631400-76645600	Weak transcription	Placenta	Placenta
4	chr11:76631400-76645600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:76631400-76645800	Weak transcription	Fetal Lung	lung
6	chr11:76631400-76646000	Weak transcription	HUVEC	blood vessel
7	chr11:76631400-76649000	Weak transcription	Aorta	Aorta
8	chr11:76631400-76655000	Weak transcription	Primary B cells from cord blood	blood
9	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:76631600-76645600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:76631600-76645800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:76631600-76645800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:76631600-76645800	Weak transcription	Brain Substantia Nigra	brain
14	chr11:76631600-76646000	Weak transcription	Primary T cells from cord blood	blood
15	chr11:76631600-76646400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:76631600-76646600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:76631600-76646600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:76631600-76657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:76631600-76670200	Weak transcription	Left Ventricle	heart
20	chr11:76631600-76671600	Weak transcription	Ovary	ovary
21	chr11:76632200-76645800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:76633400-76645800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:76635200-76646400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:76638800-76651600	Weak transcription	Colonic Mucosa	Colon
25	chr11:76641400-76646600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:76642000-76646200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:76642400-76645800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:76643000-76646400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:76643000-76647200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:76643200-76645600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:76643200-76647200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:76643800-76645600	Weak transcription	Adipose Nuclei	Adipose
33	chr11:76643800-76645800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:76644000-76645600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:76644000-76666400	Weak transcription	NHEK	skin
36	chr11:76644200-76645600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:76644200-76645600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:76644200-76645600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:76644200-76645600	Weak transcription	Liver	Liver
40	chr11:76644200-76645600	Weak transcription	HMEC	breast
41	chr11:76644200-76645600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr11:76644200-76645600	Weak transcription	NHDF-Ad	bronchial
43	chr11:76644200-76645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:76644200-76645800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:76644200-76645800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:76644200-76645800	Weak transcription	A549	lung
47	chr11:76644200-76646600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr11:76644200-76646600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:76644200-76653000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:76644400-76646600	Weak transcription	Brain Angular Gyrus	brain

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