Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899309	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236978	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11236995	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236998	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237012	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11237046	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12785994	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs12790535	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12791896	0.80[EUR][1000 genomes]
rs12791998	1.00[CEU][hapmap]
rs12792209	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12792893	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12793219	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12795242	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12797385	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12797610	1.00[CEU][hapmap]
rs12806029	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34683571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7944465	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76608800-76622600	Weak transcription	Left Ventricle	heart
3	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:76613800-76622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:76613800-76622600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:76615000-76620200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:76615600-76622200	Weak transcription	Small Intestine	intestine
8	chr11:76615600-76631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:76617600-76622400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76617800-76621600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:76617800-76622000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:76617800-76630000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:76617800-76630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:76618600-76629800	Weak transcription	A549	lung
16	chr11:76618600-76630000	Weak transcription	Monocytes-CD14+_RO01746	blood

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