Variant report

Variant	rs11572785
Chromosome Location	chr1:216736206-216736207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216734438..216737180-chr1:216741885..216744740,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11572717	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs11572728	1.00[AMR][1000 genomes]
rs11572730	1.00[AMR][1000 genomes]
rs11572740	1.00[AMR][1000 genomes]
rs11572754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11572838	1.00[AMR][1000 genomes]
rs12239412	1.00[AMR][1000 genomes]
rs12239416	1.00[AMR][1000 genomes]
rs13374943	1.00[AMR][1000 genomes]
rs13375077	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs1339351	1.00[JPT][hapmap]
rs1339357	1.00[JPT][hapmap]
rs1361333	1.00[JPT][hapmap]
rs1361334	1.00[JPT][hapmap]
rs1416616	1.00[JPT][hapmap]
rs1416617	1.00[JPT][hapmap]
rs1498291	1.00[AMR][1000 genomes]
rs17043116	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1857402	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs2789729	1.00[JPT][hapmap]
rs2813696	1.00[JPT][hapmap]
rs2813697	1.00[JPT][hapmap]
rs2813701	1.00[JPT][hapmap]
rs2813708	1.00[JPT][hapmap]
rs2813709	1.00[JPT][hapmap]
rs28515906	1.00[AMR][1000 genomes]
rs60945404	0.96[ASN][1000 genomes]
rs6661678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6678051	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6682620	1.00[AMR][1000 genomes]
rs6685419	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6693114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6699811	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6700565	1.00[JPT][hapmap]
rs7530898	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv873178	chr1:216714314-216813244	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv4565	chr1:216720070-216765053	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv520098	chr1:216736138-216745599	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv468138	chr1:216736138-216762158	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv549203	chr1:216736138-216762158	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216708800-216744600	Weak transcription	Left Ventricle	heart
2	chr1:216721800-216774000	Weak transcription	Placenta	Placenta
3	chr1:216734200-216736600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:216735800-216738800	Weak transcription	Fetal Heart	heart
5	chr1:216735800-216755000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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