Variant report

Variant	rs11602036
Chromosome Location	chr11:46794885-46794886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1007738	0.89[ASN][1000 genomes]
rs10734548	0.96[ASN][1000 genomes]
rs10734549	0.91[ASN][1000 genomes]
rs10742784	0.83[ASN][1000 genomes]
rs10769208	0.91[ASN][1000 genomes]
rs10769211	0.87[ASN][1000 genomes]
rs10769212	0.85[ASN][1000 genomes]
rs10838620	0.91[ASN][1000 genomes]
rs10838624	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10838627	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10838628	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11038977	0.84[AMR][1000 genomes]
rs11038994	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11038999	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039002	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039014	0.85[ASN][1000 genomes]
rs11039017	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11602537	0.84[AMR][1000 genomes]
rs11604876	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12574512	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12575609	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12806577	0.85[ASN][1000 genomes]
rs1551744	0.89[ASN][1000 genomes]
rs1799867	0.85[AMR][1000 genomes]
rs1809293	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2070850	0.83[AMR][1000 genomes]
rs2290883	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2290884	0.85[ASN][1000 genomes]
rs2306026	0.85[ASN][1000 genomes]
rs2306028	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306033	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136441	0.84[AMR][1000 genomes]
rs3136449	0.84[AMR][1000 genomes]
rs3136457	0.84[AMR][1000 genomes]
rs3136460	0.84[AMR][1000 genomes]
rs3136499	0.83[AMR][1000 genomes]
rs3816614	0.85[ASN][1000 genomes]
rs3829940	0.87[ASN][1000 genomes]
rs4075619	0.91[ASN][1000 genomes]
rs4076557	0.84[AMR][1000 genomes]
rs4294527	0.90[ASN][1000 genomes]
rs4453193	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4453194	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4469848	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4491174	0.80[AMR][1000 genomes]
rs4534535	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752931	0.84[AMR][1000 genomes]
rs4752932	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4752933	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752936	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4752940	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752941	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752946	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4752947	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57704144	0.84[AMR][1000 genomes]
rs58389391	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58561056	0.80[AMR][1000 genomes]
rs58922799	0.81[AMR][1000 genomes]
rs5896	0.84[AMR][1000 genomes]
rs60258676	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61337452	0.80[AMR][1000 genomes]
rs6485692	0.95[ASN][1000 genomes]
rs6485695	0.91[ASN][1000 genomes]
rs7101374	0.91[ASN][1000 genomes]
rs7107778	0.89[ASN][1000 genomes]
rs7109707	0.91[ASN][1000 genomes]
rs7480140	0.89[ASN][1000 genomes]
rs7480260	0.90[ASN][1000 genomes]
rs7929294	0.95[ASN][1000 genomes]
rs7934421	0.89[ASN][1000 genomes]
rs7940578	0.94[ASN][1000 genomes]
rs7940682	0.95[ASN][1000 genomes]
rs7941894	0.94[ASN][1000 genomes]
rs7941964	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7943866	0.85[ASN][1000 genomes]
rs964551	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430382	chr11:46743135-46849360	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3388509	chr11:46763105-46818814	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46760400-46795600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:46761400-46795800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:46761400-46840000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:46761400-46845200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:46761600-46824600	Strong transcription	Fetal Thymus	thymus
6	chr11:46762600-46795200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:46762600-46795200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:46762600-46795800	Strong transcription	Dnd41	blood
9	chr11:46762600-46804000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:46762600-46826000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:46762600-46841400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:46762800-46804800	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:46762800-46835600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:46762800-46842400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr11:46763200-46795600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:46763400-46839600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:46766000-46795600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr11:46770200-46818200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:46778800-46841200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:46779400-46824600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:46779600-46795800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:46780600-46814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:46782600-46847400	Weak transcription	Stomach Mucosa	stomach
24	chr11:46784000-46804000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:46784200-46800000	Weak transcription	Gastric	stomach
26	chr11:46784400-46800800	Weak transcription	Esophagus	oesophagus
27	chr11:46785800-46807800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:46786000-46799000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:46786000-46809600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:46786800-46795600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:46787000-46828200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr11:46787200-46795400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:46787800-46795600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr11:46787800-46824600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:46788000-46826200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:46788200-46825800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:46788200-46841400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:46788600-46795400	Strong transcription	Fetal Intestine Small	intestine
39	chr11:46788600-46795600	Strong transcription	Fetal Muscle Leg	muscle
40	chr11:46788600-46797600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr11:46788600-46824200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr11:46788600-46840600	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr11:46788800-46824000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:46789800-46795000	Strong transcription	Fetal Brain Female	brain
45	chr11:46791400-46797200	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:46791800-46797000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:46791800-46799000	Weak transcription	Right Ventricle	heart
48	chr11:46791800-46800000	Weak transcription	Aorta	Aorta
49	chr11:46791800-46801400	Weak transcription	Psoas Muscle	Psoas
50	chr11:46792000-46795400	Weak transcription	Brain Anterior Caudate	brain

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