Variant report

Variant	rs11604260
Chromosome Location	chr11:102111997-102111998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10219215	1.00[CHB][hapmap]
rs1058606	1.00[CHB][hapmap]
rs11225235	1.00[CHB][hapmap]
rs11225237	1.00[CHB][hapmap]
rs11547915	1.00[CHB][hapmap]
rs11601671	1.00[CHB][hapmap]
rs11604008	1.00[CHB][hapmap]
rs11604189	1.00[CHB][hapmap]
rs11605066	1.00[CHB][hapmap]
rs11607908	1.00[CHB][hapmap]
rs12271457	1.00[CHB][hapmap]
rs12274405	1.00[CHB][hapmap]
rs12275185	1.00[CHB][hapmap]
rs12275349	1.00[CHB][hapmap]
rs12277594	1.00[CHB][hapmap]
rs12277853	1.00[CHB][hapmap]
rs12279056	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12283885	1.00[CHB][hapmap]
rs12291114	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12293834	1.00[CHB][hapmap]
rs12792649	1.00[CHB][hapmap]
rs12794864	1.00[ASN][1000 genomes]
rs12799274	1.00[ASN][1000 genomes]
rs17350205	1.00[CHB][hapmap]
rs17769668	1.00[ASN][1000 genomes]
rs1943781	1.00[CHB][hapmap]
rs33945990	1.00[ASN][1000 genomes]
rs34422940	1.00[ASN][1000 genomes]
rs34740624	1.00[CHB][hapmap]
rs484068	1.00[CHB][hapmap]
rs485020	1.00[CHB][hapmap]
rs525305	1.00[CHB][hapmap]
rs531350	1.00[CHB][hapmap]
rs60724341	1.00[ASN][1000 genomes]
rs61895369	1.00[ASN][1000 genomes]
rs637708	1.00[CHB][hapmap]
rs670334	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102081200-102118600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:102093000-102113000	Weak transcription	Ovary	ovary
3	chr11:102095200-102118600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:102096800-102114600	Weak transcription	Small Intestine	intestine
5	chr11:102097800-102119600	Weak transcription	Right Atrium	heart
6	chr11:102098400-102118600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:102099000-102112800	Weak transcription	Hela-S3	cervix
8	chr11:102100800-102112800	Weak transcription	Fetal Heart	heart
9	chr11:102100800-102113000	Weak transcription	Esophagus	oesophagus
10	chr11:102101800-102112800	Weak transcription	Liver	Liver
11	chr11:102102000-102115400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:102104600-102118600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:102105000-102118600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:102105200-102118600	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:102105200-102118600	Weak transcription	Fetal Stomach	stomach
16	chr11:102105200-102118600	Weak transcription	Left Ventricle	heart
17	chr11:102105400-102112000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:102105400-102115400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:102106000-102112000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:102106000-102113200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:102106000-102115800	Weak transcription	Aorta	Aorta
22	chr11:102106000-102118600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:102106200-102112800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:102106200-102118600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:102106200-102118600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:102106400-102118600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:102107800-102114600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:102108000-102113400	Weak transcription	NHEK	skin
29	chr11:102108000-102115400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:102108400-102113000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:102109600-102113000	Weak transcription	HMEC	breast
32	chr11:102109800-102113000	Weak transcription	Fetal Intestine Small	intestine
33	chr11:102110200-102116400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:102110200-102118600	Weak transcription	Fetal Intestine Large	intestine
35	chr11:102110600-102114000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:102111000-102113600	Enhancers	Osteobl	bone
37	chr11:102111200-102112200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:102111200-102112200	Enhancers	NHLF	lung
39	chr11:102111200-102112400	Enhancers	NHDF-Ad	bronchial
40	chr11:102111200-102113800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:102111200-102116200	Enhancers	HepG2	liver
42	chr11:102111400-102112200	Enhancers	Adipose Nuclei	Adipose
43	chr11:102111400-102112200	Enhancers	HSMM	muscle
44	chr11:102111400-102112200	Enhancers	NH-A	brain
45	chr11:102111400-102113400	Enhancers	Fetal Lung	lung
46	chr11:102111400-102113800	Enhancers	A549	lung
47	chr11:102111400-102114000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:102111600-102112000	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr11:102111600-102112000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:102111600-102112000	Enhancers	Lung	lung

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