Variant report

Variant	rs11661270
Chromosome Location	chr18:24360435-24360436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11659904	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11659906	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11663064	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12954845	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12965167	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17611328	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34047317	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34315959	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34791772	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34909051	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35601155	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66522730	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67918306	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24356600-24361000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:24358400-24361200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr18:24358600-24360600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr18:24358800-24361200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr18:24359000-24360600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:24359000-24360800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:24359200-24360600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:24359400-24361000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr18:24359400-24361600	Enhancers	Liver	Liver
10	chr18:24360000-24361600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:24360000-24362600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr18:24360200-24361000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr18:24360200-24361400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr18:24360200-24363200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr18:24360200-24364600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr18:24360400-24360600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr18:24360400-24360800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr18:24360400-24361000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr18:24360400-24361000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr18:24360400-24361200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr18:24360400-24361600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr18:24360400-24361600	Enhancers	Brain Angular Gyrus	brain
23	chr18:24360400-24361600	Enhancers	Dnd41	blood
24	chr18:24360400-24361800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr18:24360400-24361800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr18:24360400-24362200	Enhancers	Brain Hippocampus Middle	brain
27	chr18:24360400-24362400	Enhancers	Brain Anterior Caudate	brain
28	chr18:24360400-24362400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr18:24360400-24362800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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