Variant report

Variant	rs11664654
Chromosome Location	chr18:44945961-44945962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44944185..44945967-chr18:44952003..44954694,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1036347	0.87[ASN][1000 genomes]
rs11082595	0.92[CEU][hapmap]
rs11659633	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11659653	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11661781	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11662694	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12604962	0.91[CEU][hapmap]
rs12956867	0.80[ASN][1000 genomes]
rs1434503	0.81[ASN][1000 genomes]
rs1434504	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16953105	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17734689	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2000831	0.90[ASN][1000 genomes]
rs2164100	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4986229	0.81[ASN][1000 genomes]
rs62095733	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62097072	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62097077	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62097078	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6507741	0.86[EUR][1000 genomes]
rs6507742	0.83[EUR][1000 genomes]
rs7235819	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72916595	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7351047	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8097518	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs892577	0.81[ASN][1000 genomes]
rs9954408	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9956945	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801141	chr18:44908270-44955409	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44938000-44951400	Weak transcription	Pancreas	Pancrea
2	chr18:44944600-44946400	Bivalent Enhancer	GM12878-XiMat	blood
3	chr18:44945000-44947000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:44945200-44946000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr18:44945200-44946000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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