Variant report

Variant	rs62095733
Chromosome Location	chr18:44947975-44947976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1036347	0.88[ASN][1000 genomes]
rs11659633	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11659653	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11661781	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11662694	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11664654	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12956867	0.81[ASN][1000 genomes]
rs1434503	0.82[ASN][1000 genomes]
rs1434504	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16953105	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17734689	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2000831	0.89[ASN][1000 genomes]
rs2164100	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4986229	0.82[ASN][1000 genomes]
rs62097072	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62097077	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62097078	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6507741	0.87[EUR][1000 genomes]
rs6507742	0.82[EUR][1000 genomes]
rs7235819	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72916595	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7351047	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8097518	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs892577	0.82[ASN][1000 genomes]
rs9954408	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9956945	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801141	chr18:44908270-44955409	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44938000-44951400	Weak transcription	Pancreas	Pancrea
2	chr18:44946600-44948600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr18:44947400-44948000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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