Variant report

Variant	rs9954408
Chromosome Location	chr18:45010577-45010578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1036347	0.88[ASN][1000 genomes]
rs11082592	0.89[EUR][1000 genomes]
rs11659633	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11659653	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11661781	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662694	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11664654	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11665213	0.85[EUR][1000 genomes]
rs12956867	0.96[ASN][1000 genomes]
rs12957726	0.84[ASN][1000 genomes]
rs1434503	0.93[ASN][1000 genomes]
rs1434504	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16953105	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17734689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000831	0.85[ASN][1000 genomes]
rs2164100	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4986229	0.93[ASN][1000 genomes]
rs57557610	0.81[AFR][1000 genomes]
rs58303507	0.81[AFR][1000 genomes]
rs62095733	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62097072	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62097077	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62097078	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6507741	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6507742	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6507744	0.85[EUR][1000 genomes]
rs7235819	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72916595	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7351047	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7506314	0.83[EUR][1000 genomes]
rs8097518	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892577	0.93[ASN][1000 genomes]
rs9304349	0.83[EUR][1000 genomes]
rs9956945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45009800-45012200	Enhancers	Left Ventricle	heart
2	chr18:45010000-45011400	Weak transcription	Right Atrium	heart
3	chr18:45010200-45011000	Enhancers	Fetal Heart	heart
4	chr18:45010400-45010600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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