Variant report

Variant	rs16953105
Chromosome Location	chr18:44983656-44983657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1036347	1.00[ASN][1000 genomes]
rs11082592	0.87[EUR][1000 genomes]
rs11082595	0.84[CEU][hapmap]
rs11659633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11659653	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11661781	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11662694	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11664654	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11665213	0.83[EUR][1000 genomes]
rs12604962	0.82[CEU][hapmap]
rs12956867	0.93[ASN][1000 genomes]
rs1434503	0.94[ASN][1000 genomes]
rs1434504	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17734689	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2000831	0.97[ASN][1000 genomes]
rs2164100	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4986229	0.94[ASN][1000 genomes]
rs62095733	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62097072	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62097077	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62097078	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6507741	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6507742	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6507744	0.84[EUR][1000 genomes]
rs7235819	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916595	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7351047	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7506314	0.81[EUR][1000 genomes]
rs8097518	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs892577	0.94[ASN][1000 genomes]
rs9304349	0.81[EUR][1000 genomes]
rs9954408	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9956945	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv517425	chr18:44983381-44998024	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44980400-44988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:44981200-44984400	Enhancers	Fetal Intestine Large	intestine
3	chr18:44981200-44984400	Enhancers	Fetal Intestine Small	intestine
4	chr18:44983200-44983800	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr18:44983400-44984400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr18:44983600-44984200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:44983600-44984400	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links