Variant report

Variant	rs12956867
Chromosome Location	chr18:44990086-44990087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1036347	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11659633	0.91[ASN][1000 genomes]
rs11659653	1.00[ASN][1000 genomes]
rs11661781	0.96[ASN][1000 genomes]
rs11662694	0.85[ASN][1000 genomes]
rs11664654	0.80[ASN][1000 genomes]
rs12957726	0.82[ASN][1000 genomes]
rs1434503	0.97[ASN][1000 genomes]
rs1434504	0.94[ASN][1000 genomes]
rs16953105	0.93[ASN][1000 genomes]
rs17734689	0.96[ASN][1000 genomes]
rs2000831	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2164100	0.89[ASN][1000 genomes]
rs4986229	0.97[ASN][1000 genomes]
rs62095733	0.81[ASN][1000 genomes]
rs62097072	0.89[ASN][1000 genomes]
rs62097077	0.98[ASN][1000 genomes]
rs62097078	0.98[ASN][1000 genomes]
rs6507741	0.96[ASN][1000 genomes]
rs6507742	0.98[ASN][1000 genomes]
rs7235819	0.93[ASN][1000 genomes]
rs72916595	0.88[ASN][1000 genomes]
rs7351047	0.90[ASN][1000 genomes]
rs8097518	0.96[ASN][1000 genomes]
rs892577	0.97[ASN][1000 genomes]
rs9954408	0.96[ASN][1000 genomes]
rs9956945	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv517425	chr18:44983381-44998024	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44989800-44990200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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