Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1170577	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1170585	1.00[CEU][hapmap]
rs1170632	1.00[YRI][hapmap]
rs1367245	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1367248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1529292	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1569273	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2420570	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4311067	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs72843617	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7583123	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs779974	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs780011	0.86[EUR][1000 genomes]
rs780021	0.86[EUR][1000 genomes]
rs780022	0.86[EUR][1000 genomes]
rs780037	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs780038	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs780039	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs780043	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs780049	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs780053	0.85[EUR][1000 genomes]
rs780055	0.85[EUR][1000 genomes]
rs801924	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs812952	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs959019	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124971600-124972400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr2:124971600-124972400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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