Variant report

Variant	rs780049
Chromosome Location	chr2:125033303-125033304
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11679566	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs1170577	0.81[CEU][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1170585	0.81[CEU][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs1170587	0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1367245	0.81[CEU][hapmap]
rs1367248	0.81[CEU][hapmap]
rs1529292	0.81[CEU][hapmap];0.84[MEX][hapmap]
rs1569273	0.86[CEU][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs17011309	0.92[MEX][hapmap]
rs2420570	0.81[CEU][hapmap]
rs4311067	0.81[CEU][hapmap]
rs72843617	0.91[EUR][1000 genomes]
rs7583123	0.81[MEX][hapmap]
rs779974	1.00[ASW][hapmap];0.94[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs780011	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs780012	0.81[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs780021	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs780022	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs780037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs780038	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs780039	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs780043	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs780053	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs780055	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs801924	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs812952	0.87[CEU][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs959019	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125025800-125041200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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