Variant report

Variant	rs1367245
Chromosome Location	chr2:124965993-124965994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11679566	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1170577	1.00[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1170585	1.00[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs1170632	1.00[YRI][hapmap]
rs1367248	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1529292	1.00[CEU][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.83[LWK][hapmap];0.84[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap]
rs1569273	1.00[CEU][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap]
rs2420570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4311067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs72843617	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7583123	0.88[CEU][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap];0.83[LWK][hapmap];0.81[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap]
rs779974	0.88[CEU][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs780011	0.86[EUR][1000 genomes]
rs780021	0.86[EUR][1000 genomes]
rs780022	0.86[EUR][1000 genomes]
rs780037	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs780038	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs780039	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs780043	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs780049	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs780053	0.86[EUR][1000 genomes]
rs780055	0.86[EUR][1000 genomes]
rs801924	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs812952	0.94[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs959019	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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