Variant report

Variant	rs779974
Chromosome Location	chr2:125022744-125022745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11679566	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs1170577	0.88[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1170585	0.88[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap]
rs1170587	0.82[JPT][hapmap]
rs1367245	0.88[CEU][hapmap];0.82[TSI][hapmap]
rs1367248	0.88[CEU][hapmap]
rs1529292	0.88[CEU][hapmap];0.82[TSI][hapmap]
rs1569273	0.93[CEU][hapmap];0.84[TSI][hapmap]
rs17011309	0.84[MEX][hapmap]
rs2420570	0.88[CEU][hapmap]
rs4311067	0.88[CEU][hapmap]
rs72843617	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs780011	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs780021	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs780022	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs780037	0.94[CEU][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs780038	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs780039	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs780043	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs780049	1.00[ASW][hapmap];0.94[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs780053	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs780055	0.96[EUR][1000 genomes]
rs801924	0.94[CEU][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs812952	0.94[CEU][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs959019	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125021600-125024800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:125022200-125023400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:125022400-125023000	Enhancers	Lung	lung

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