Variant report

Variant	rs812952
Chromosome Location	chr2:125022152-125022153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11679566	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs1170577	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1170585	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs1367245	0.94[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs1367248	0.94[CEU][hapmap]
rs1529292	0.94[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs1569273	1.00[CEU][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs2420570	0.94[CEU][hapmap]
rs4311067	0.94[CEU][hapmap]
rs72843617	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583123	0.82[CEU][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs779974	0.94[CEU][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs780011	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs780021	0.91[EUR][1000 genomes]
rs780022	0.91[EUR][1000 genomes]
rs780037	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs780038	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780039	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780043	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780049	0.87[CEU][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs780053	0.92[EUR][1000 genomes]
rs780055	0.92[EUR][1000 genomes]
rs801924	0.87[CEU][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs801925	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.84[MKK][hapmap];0.94[YRI][hapmap];0.97[ASN][1000 genomes]
rs959019	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125021600-125024800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links