Variant report

Variant	rs801924
Chromosome Location	chr2:125042854-125042855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:125042727..125044673-chr2:125055207..125057776,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11679566	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1170577	0.81[CEU][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes]
rs1170585	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs1170587	0.93[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.98[ASN][1000 genomes]
rs1367245	0.81[CEU][hapmap]
rs1367248	0.81[CEU][hapmap]
rs1529292	0.81[CEU][hapmap]
rs1569273	0.86[CEU][hapmap]
rs2420570	0.81[CEU][hapmap]
rs4311067	0.81[CEU][hapmap]
rs72843617	0.91[EUR][1000 genomes]
rs779974	0.94[CEU][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs780011	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs780012	0.93[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.99[ASN][1000 genomes]
rs780021	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780022	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780037	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs780038	0.91[EUR][1000 genomes]
rs780039	0.91[EUR][1000 genomes]
rs780043	0.91[EUR][1000 genomes]
rs780049	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs780053	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs780055	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs812952	0.87[CEU][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs959019	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv874990	chr2:125038678-125099924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125041600-125043800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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