Variant report

Variant	rs11691934
Chromosome Location	chr2:86165443-86165444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17026728	0.81[JPT][hapmap]
rs2033770	0.82[ASN][1000 genomes]
rs2033771	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2366955	0.82[ASN][1000 genomes]
rs2438307	0.87[CHD][hapmap]
rs3770093	0.81[JPT][hapmap]
rs4832228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547649	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11691934	POLR1A	cis	parietal	SCAN
rs11691934	KANK2	trans	cerebellum	SCAN
rs11691934	RNF103	cis	cerebellum	SCAN
rs11691934	C2orf23	cis	multi-tissue	Pritchard
rs11691934	NUP214	trans	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86160800-86166800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:86161400-86166200	Weak transcription	Ovary	ovary
3	chr2:86163400-86166000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:86163800-86165600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:86164200-86169200	Weak transcription	Pancreas	Pancrea
6	chr2:86164200-86169400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:86164600-86166800	Enhancers	Liver	Liver
8	chr2:86164800-86166200	Enhancers	A549	lung
9	chr2:86164800-86168400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:86165000-86167600	Weak transcription	Spleen	Spleen
11	chr2:86165200-86166400	Enhancers	HUVEC	blood vessel
12	chr2:86165400-86165600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:86165400-86165600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:86165400-86165600	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links