Variant report

Variant	rs2033770
Chromosome Location	chr2:86167829-86167830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11691934	0.82[ASN][1000 genomes]
rs12714159	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1370699	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17026728	0.80[JPT][hapmap]
rs2033771	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2196701	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2218036	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2366955	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2366957	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2438307	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs3770093	0.80[JPT][hapmap]
rs4832228	0.82[ASN][1000 genomes]
rs4832230	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6547649	0.81[ASN][1000 genomes]
rs6711420	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2033770	FUNDC2P2	cis	parietal	SCAN
rs2033770	C2orf23	cis	multi-tissue	Pritchard
rs2033770	POLR1A	cis	parietal	SCAN
rs2033770	MRPL35	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86164200-86169200	Weak transcription	Pancreas	Pancrea
2	chr2:86164200-86169400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:86164800-86168400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:86167600-86168400	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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