Variant report

Variant	rs11697973
Chromosome Location	chr2:155696449-155696450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10485824	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11087048	1.00[ASN][1000 genomes]
rs11697395	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11697987	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11698000	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13433171	1.00[ASN][1000 genomes]
rs16995146	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16995228	1.00[ASN][1000 genomes]
rs16995310	1.00[ASN][1000 genomes]
rs16995332	1.00[ASN][1000 genomes]
rs17794135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33999287	1.00[ASN][1000 genomes]
rs35442028	1.00[ASN][1000 genomes]
rs4536713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45512895	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4813115	1.00[ASN][1000 genomes]
rs56035174	1.00[ASN][1000 genomes]
rs59377624	1.00[ASN][1000 genomes]
rs59681252	1.00[ASN][1000 genomes]
rs6033534	1.00[ASN][1000 genomes]
rs6033554	1.00[ASN][1000 genomes]
rs6033660	1.00[ASN][1000 genomes]
rs6033672	1.00[ASN][1000 genomes]
rs6033871	1.00[ASN][1000 genomes]
rs6033896	1.00[ASN][1000 genomes]
rs6041689	1.00[ASN][1000 genomes]
rs6041717	1.00[ASN][1000 genomes]
rs6042000	1.00[ASN][1000 genomes]
rs6042506	1.00[ASN][1000 genomes]
rs6042550	1.00[ASN][1000 genomes]
rs6042568	1.00[ASN][1000 genomes]
rs6042574	1.00[ASN][1000 genomes]
rs6042578	1.00[ASN][1000 genomes]
rs6105031	1.00[ASN][1000 genomes]
rs6109740	1.00[ASN][1000 genomes]
rs6109784	1.00[ASN][1000 genomes]
rs6110189	1.00[ASN][1000 genomes]
rs6110193	1.00[ASN][1000 genomes]
rs62187542	1.00[ASN][1000 genomes]
rs62187543	1.00[ASN][1000 genomes]
rs62623705	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6514337	1.00[ASN][1000 genomes]
rs6514364	1.00[ASN][1000 genomes]
rs7271240	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7274052	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73067251	1.00[ASN][1000 genomes]
rs73069188	1.00[ASN][1000 genomes]
rs73076965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73076966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747611	1.00[ASN][1000 genomes]
rs8117563	1.00[ASN][1000 genomes]
rs8118276	1.00[ASN][1000 genomes]
rs958839	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530512	chr2:155398098-156224370	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1003775	chr2:155594933-155780009	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:155665200-155700800	Weak transcription	Fetal Intestine Small	intestine

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