The 2.0 version of rSNPBase

Variant report

Variant rs6042000
Chromosome Location chr20:1381694-1381695
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1374800-1382800 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr20:1374800-1383000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr20:1377600-1383000 Enhancers HUVEC blood vessel
4 chr20:1377800-1382800 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr20:1377800-1382800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr20:1378000-1382800 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr20:1378000-1382800 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr20:1378000-1383000 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr20:1378600-1383600 Enhancers Fetal Intestine Large intestine
10 chr20:1378600-1384400 Enhancers Fetal Intestine Small intestine
11 chr20:1378800-1383200 Enhancers Duodenum Mucosa Duodenum
12 chr20:1379000-1382000 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr20:1379200-1382800 Weak transcription Dnd41 blood
14 chr20:1379600-1382800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr20:1379600-1383400 Enhancers HMEC breast
16 chr20:1379600-1383800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr20:1380000-1384400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr20:1380400-1382200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
19 chr20:1380400-1382600 Enhancers HSMM muscle
20 chr20:1380400-1382600 Enhancers NH-A brain
21 chr20:1380400-1383200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
22 chr20:1380400-1383400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr20:1380400-1383600 Enhancers Muscle Satellite Cultured Cells --
24 chr20:1380400-1383600 Enhancers Osteobl bone
25 chr20:1380600-1381800 Weak transcription Small Intestine intestine
26 chr20:1380600-1382400 Enhancers NHDF-Ad bronchial
27 chr20:1380600-1383600 Enhancers Liver Liver
28 chr20:1380600-1383800 Enhancers NHEK skin
29 chr20:1380600-1388400 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr20:1380800-1382000 Bivalent Enhancer Fetal Muscle Leg muscle
31 chr20:1380800-1382800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr20:1380800-1383600 Enhancers Rectal Mucosa Donor 31 rectum
33 chr20:1381000-1382400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr20:1381000-1383400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr20:1381200-1382200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr20:1381200-1382400 Enhancers Placenta Placenta
37 chr20:1381200-1383400 Enhancers Sigmoid Colon Sigmoid Colon
38 chr20:1381400-1381800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr20:1381400-1381800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr20:1381400-1382200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr20:1381400-1382200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr20:1381400-1383000 Bivalent Enhancer HepG2 liver
43 chr20:1381400-1383400 Enhancers Colonic Mucosa Colon
44 chr20:1381600-1382400 Enhancers Rectal Mucosa Donor 29 rectum
45 chr20:1381600-1382400 Enhancers Hela-S3 cervix

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Last update: Aug 31, 2015