The 2.0 version of rSNPBase

Variant report

Variant rs6041382
Chromosome Location chr20:1300395-1300396
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1283800-1301800 Weak transcription HSMMtube muscle
2 chr20:1284200-1303600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr20:1289600-1305000 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr20:1293400-1302200 Weak transcription Esophagus oesophagus
5 chr20:1294200-1301600 Weak transcription Spleen Spleen
6 chr20:1294200-1302000 Weak transcription Gastric stomach
7 chr20:1294200-1302200 Weak transcription Pancreas Pancrea
8 chr20:1294200-1305600 Weak transcription Ovary ovary
9 chr20:1294400-1301600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr20:1294400-1304800 Weak transcription Placenta Placenta
11 chr20:1294600-1302800 Weak transcription NHEK skin
12 chr20:1294600-1305200 Weak transcription Colon Smooth Muscle Colon
13 chr20:1294600-1305200 Weak transcription Fetal Thymus thymus
14 chr20:1294600-1305400 Weak transcription Colonic Mucosa Colon
15 chr20:1294800-1302200 Weak transcription Adipose Nuclei Adipose
16 chr20:1294800-1305200 Weak transcription Dnd41 blood
17 chr20:1295000-1300800 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr20:1295000-1302200 Weak transcription Stomach Mucosa stomach
19 chr20:1295000-1302200 Weak transcription HUVEC blood vessel
20 chr20:1296000-1301800 Strong transcription Fetal Intestine Small intestine
21 chr20:1297400-1300800 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr20:1298200-1300400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
23 chr20:1298600-1302800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr20:1298600-1302800 Weak transcription NHLF lung
25 chr20:1298600-1305000 Weak transcription A549 lung
26 chr20:1298800-1300400 Strong transcription Rectal Mucosa Donor 29 rectum
27 chr20:1298800-1300600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
28 chr20:1298800-1302200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr20:1298800-1303000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr20:1298800-1303200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr20:1298800-1303800 Weak transcription Hela-S3 cervix
32 chr20:1299000-1300600 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr20:1299000-1302000 Weak transcription Liver Liver
34 chr20:1299000-1302800 Weak transcription NHDF-Ad bronchial
35 chr20:1299000-1303200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr20:1299000-1305200 Weak transcription GM12878-XiMat blood
37 chr20:1299600-1300400 Enhancers Muscle Satellite Cultured Cells --
38 chr20:1299600-1301000 Strong transcription Fetal Intestine Large intestine
39 chr20:1299800-1304600 Weak transcription Duodenum Mucosa Duodenum
40 chr20:1300000-1300400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr20:1300000-1300400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
42 chr20:1300000-1302800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr20:1300200-1300600 Weak transcription Lung lung
44 chr20:1300200-1301600 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr20:1300200-1301800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr20:1300200-1303000 Weak transcription NH-A brain
47 chr20:1300200-1303000 Weak transcription Osteobl bone

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Last update: Aug 31, 2015