Variant report

Variant	rs73581208
Chromosome Location	chr20:1314860-1314861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr20:1314639-1314975	HepG2	liver:	n/a	n/a
2	CEBPB	chr20:1314659-1314946	A549	lung:	n/a	n/a
3	SPI1	chr20:1314805-1315238	HL-60	blood:	n/a	n/a
4	JUN	chr20:1314683-1314915	HepG2	liver:	n/a	chr20:1314799-1314812
5	POLR2A	chr20:1312270-1318121	SK-N-MC	brain:	n/a	n/a
6	JUND	chr20:1314696-1314922	K562	blood:	n/a	n/a
7	POLR2A	chr20:1314588-1314985	MCF10A-Er-Src	breast:	n/a	n/a
8	JUND	chr20:1314684-1314941	HepG2	liver:	n/a	n/a
9	POLR2A	chr20:1313593-1315919	HepG2	liver:	n/a	n/a
10	CEBPB	chr20:1314661-1314883	K562	blood:	n/a	n/a
11	POLR2A	chr20:1312573-1316280	K562	blood:	n/a	n/a
12	POLR2A	chr20:1313966-1315168	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:1313519..1315747-chr20:1323872..1325859,2	MCF-7	breast:
2	chr20:1310189..1311997-chr20:1314145..1316733,2	K562	blood:

Variant related genes	Relation type
SDCBP2	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11087048	1.00[ASN][1000 genomes]
rs13433171	1.00[ASN][1000 genomes]
rs4577347	1.00[ASN][1000 genomes]
rs4813115	1.00[ASN][1000 genomes]
rs56035174	1.00[ASN][1000 genomes]
rs57806058	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59377624	1.00[ASN][1000 genomes]
rs59681252	1.00[ASN][1000 genomes]
rs6033534	1.00[ASN][1000 genomes]
rs6033554	1.00[ASN][1000 genomes]
rs6033660	1.00[ASN][1000 genomes]
rs6033672	1.00[ASN][1000 genomes]
rs6033871	1.00[ASN][1000 genomes]
rs6033896	1.00[ASN][1000 genomes]
rs6041382	1.00[ASN][1000 genomes]
rs6041689	1.00[ASN][1000 genomes]
rs6041717	1.00[ASN][1000 genomes]
rs6042000	1.00[ASN][1000 genomes]
rs6042506	1.00[ASN][1000 genomes]
rs6042550	1.00[ASN][1000 genomes]
rs6042568	1.00[ASN][1000 genomes]
rs6042574	1.00[ASN][1000 genomes]
rs6042578	1.00[ASN][1000 genomes]
rs6104943	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6105031	1.00[ASN][1000 genomes]
rs6109437	1.00[ASN][1000 genomes]
rs6109511	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6109522	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6109740	1.00[ASN][1000 genomes]
rs6109784	1.00[ASN][1000 genomes]
rs6110189	1.00[ASN][1000 genomes]
rs6110193	1.00[ASN][1000 genomes]
rs62187542	1.00[ASN][1000 genomes]
rs62187543	1.00[ASN][1000 genomes]
rs6514337	1.00[ASN][1000 genomes]
rs6514364	1.00[ASN][1000 genomes]
rs73067251	1.00[ASN][1000 genomes]
rs73069188	1.00[ASN][1000 genomes]
rs73579382	1.00[ASN][1000 genomes]
rs747611	1.00[ASN][1000 genomes]
rs8117563	1.00[ASN][1000 genomes]
rs8117744	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8118276	1.00[ASN][1000 genomes]
rs8119259	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958839	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057939	chr20:824980-1316778	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1307200-1315400	Weak transcription	Aorta	Aorta
2	chr20:1307400-1319000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr20:1307600-1315200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr20:1307600-1315200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr20:1307600-1315800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr20:1307600-1327200	Weak transcription	Fetal Brain Female	brain
7	chr20:1307600-1340400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:1307800-1315200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr20:1307800-1316200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr20:1307800-1319400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr20:1308200-1317800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr20:1308400-1317000	Weak transcription	Brain Substantia Nigra	brain
13	chr20:1308800-1315400	Weak transcription	Fetal Heart	heart
14	chr20:1308800-1316800	Weak transcription	NH-A	brain
15	chr20:1308800-1317000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr20:1308800-1318000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr20:1309000-1315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr20:1309000-1322000	Weak transcription	HSMMtube	muscle
19	chr20:1309600-1315400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr20:1309600-1317200	Weak transcription	Colon Smooth Muscle	Colon
21	chr20:1309800-1315600	Strong transcription	Fetal Stomach	stomach
22	chr20:1309800-1335400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr20:1310000-1316800	Weak transcription	NHLF	lung
24	chr20:1310000-1317000	Weak transcription	Brain Hippocampus Middle	brain
25	chr20:1310000-1317600	Weak transcription	Ovary	ovary
26	chr20:1310000-1348800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr20:1310200-1315600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr20:1310200-1321400	Weak transcription	K562	blood
29	chr20:1310400-1315200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr20:1310400-1316200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr20:1311000-1317400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr20:1311000-1317600	Strong transcription	Dnd41	blood
33	chr20:1311400-1315200	Weak transcription	HMEC	breast
34	chr20:1311400-1315400	Strong transcription	A549	lung
35	chr20:1311400-1316600	Weak transcription	Liver	Liver
36	chr20:1311400-1317000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr20:1311600-1316800	Weak transcription	Gastric	stomach
38	chr20:1311600-1316800	Weak transcription	GM12878-XiMat	blood
39	chr20:1311600-1317000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr20:1311600-1317000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr20:1311600-1317000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr20:1311600-1335200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr20:1311800-1315200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr20:1311800-1315400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr20:1311800-1316800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr20:1311800-1317000	Weak transcription	Brain Angular Gyrus	brain
47	chr20:1311800-1317000	Weak transcription	Psoas Muscle	Psoas
48	chr20:1311800-1317200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr20:1311800-1317200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr20:1311800-1317400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links