The 2.0 version of rSNPBase

Variant report

Variant rs62187542
Chromosome Location chr20:1346854-1346855
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1310000-1348800 Weak transcription Placenta Amnion Placenta Amnion
2 chr20:1323000-1350600 Weak transcription Fetal Brain Male brain
3 chr20:1323400-1354000 Weak transcription Fetal Heart heart
4 chr20:1326000-1350600 Weak transcription Right Atrium heart
5 chr20:1326800-1348200 Weak transcription H1 Cell Line embryonic stem cell
6 chr20:1327600-1372200 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr20:1331600-1349000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr20:1331600-1358200 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr20:1332400-1348400 Weak transcription Psoas Muscle Psoas
10 chr20:1332400-1349200 Weak transcription Colonic Mucosa Colon
11 chr20:1333200-1349000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr20:1336200-1348000 Weak transcription Aorta Aorta
13 chr20:1336200-1348000 Weak transcription Brain Germinal Matrix brain
14 chr20:1336200-1348000 Weak transcription Esophagus oesophagus
15 chr20:1336200-1350600 Weak transcription Right Ventricle heart
16 chr20:1336200-1361800 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr20:1336400-1350600 Weak transcription Fetal Lung lung
18 chr20:1336400-1355600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr20:1336400-1370400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr20:1337600-1349400 Strong transcription Fetal Muscle Leg muscle
21 chr20:1337800-1348000 Weak transcription H9 Cell Line embryonic stem cell
22 chr20:1338400-1348000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr20:1338600-1354800 Strong transcription Monocytes-CD14+_RO01746 blood
24 chr20:1339000-1348800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr20:1339200-1348000 Weak transcription Fetal Kidney kidney
26 chr20:1339200-1348200 Weak transcription Brain Angular Gyrus brain
27 chr20:1339200-1348200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr20:1339200-1350600 Weak transcription Pancreas Pancrea
29 chr20:1340000-1349600 Weak transcription iPS-15b Cell Line embryonic stem cell
30 chr20:1340200-1349000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr20:1340200-1349000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr20:1341200-1347800 Weak transcription Osteobl bone
33 chr20:1341200-1348000 Weak transcription Brain Hippocampus Middle brain
34 chr20:1341200-1348000 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr20:1341200-1350400 Weak transcription iPS-20b Cell Line embryonic stem cell
36 chr20:1341200-1351000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr20:1341200-1351600 Weak transcription Rectal Smooth Muscle rectum
38 chr20:1341400-1348000 Weak transcription Brain Inferior Temporal Lobe brain
39 chr20:1341400-1348000 Weak transcription Ovary ovary
40 chr20:1341400-1370600 Weak transcription Hela-S3 cervix
41 chr20:1341600-1348000 Weak transcription Fetal Brain Female brain
42 chr20:1341600-1350600 Weak transcription Brain Substantia Nigra brain
43 chr20:1341600-1350800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr20:1341800-1347800 Weak transcription Placenta Placenta
45 chr20:1341800-1350800 Weak transcription iPS-18 Cell Line embryonic stem cell
46 chr20:1342400-1348000 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr20:1342400-1349000 Weak transcription Colon Smooth Muscle Colon
48 chr20:1342600-1348200 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr20:1342600-1348200 Weak transcription NH-A brain
50 chr20:1343200-1348200 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015