The 2.0 version of rSNPBase

Variant report

Variant rs56035174
Chromosome Location chr20:1380843-1380844
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1374400-1381400 Weak transcription Gastric stomach
2 chr20:1374800-1382800 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr20:1374800-1383000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr20:1377600-1383000 Enhancers HUVEC blood vessel
5 chr20:1377800-1382800 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr20:1377800-1382800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr20:1378000-1382800 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr20:1378000-1382800 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr20:1378000-1383000 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr20:1378600-1383600 Enhancers Fetal Intestine Large intestine
11 chr20:1378600-1384400 Enhancers Fetal Intestine Small intestine
12 chr20:1378800-1383200 Enhancers Duodenum Mucosa Duodenum
13 chr20:1379000-1382000 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr20:1379200-1382800 Weak transcription Dnd41 blood
15 chr20:1379600-1381400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr20:1379600-1382800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr20:1379600-1383400 Enhancers HMEC breast
18 chr20:1379600-1383800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr20:1379800-1381400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr20:1380000-1381200 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr20:1380000-1384400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr20:1380200-1381000 Active TSS Rectal Mucosa Donor 29 rectum
23 chr20:1380200-1381200 Weak transcription Placenta Amnion Placenta Amnion
24 chr20:1380200-1381400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
25 chr20:1380200-1381400 Enhancers Stomach Mucosa stomach
26 chr20:1380400-1381000 Flanking Active TSS HepG2 liver
27 chr20:1380400-1381000 Enhancers HSMMtube muscle
28 chr20:1380400-1381200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr20:1380400-1381400 Weak transcription Colonic Mucosa Colon
30 chr20:1380400-1382200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
31 chr20:1380400-1382600 Enhancers HSMM muscle
32 chr20:1380400-1382600 Enhancers NH-A brain
33 chr20:1380400-1383200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
34 chr20:1380400-1383400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr20:1380400-1383600 Enhancers Muscle Satellite Cultured Cells --
36 chr20:1380400-1383600 Enhancers Osteobl bone
37 chr20:1380600-1381000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr20:1380600-1381000 Enhancers Hela-S3 cervix
39 chr20:1380600-1381200 Enhancers Fetal Adrenal Gland Adrenal Gland
40 chr20:1380600-1381400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr20:1380600-1381400 Enhancers NHLF lung
42 chr20:1380600-1381600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr20:1380600-1381800 Weak transcription Small Intestine intestine
44 chr20:1380600-1382400 Enhancers NHDF-Ad bronchial
45 chr20:1380600-1383600 Enhancers Liver Liver
46 chr20:1380600-1383800 Enhancers NHEK skin
47 chr20:1380600-1388400 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr20:1380800-1381000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr20:1380800-1381000 Flanking Active TSS Skeletal Muscle Male skeletal muscle
50 chr20:1380800-1381200 Weak transcription Placenta Placenta

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015