Variant report

Variant	rs6041689
Chromosome Location	chr20:1339655-1339656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr20:1339266-1339674	GM12878	blood:	n/a	chr20:1339462-1339473

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:1321853..1323904-chr20:1339528..1342244,2	K562	blood:

Variant related genes	Relation type
ENSG00000229728	TF binding region

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10485824	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11087048	1.00[ASN][1000 genomes]
rs11697322	1.00[CHB][hapmap]
rs11697395	1.00[CHB][hapmap]
rs11697973	1.00[ASN][1000 genomes]
rs11699494	1.00[CHB][hapmap]
rs13163	1.00[CHB][hapmap]
rs13433171	1.00[ASN][1000 genomes]
rs16994239	1.00[CHB][hapmap]
rs16994549	1.00[CHB][hapmap]
rs16995146	1.00[CHB][hapmap]
rs17793560	1.00[CHB][hapmap]
rs17794135	1.00[CHB][hapmap]
rs1883933	1.00[CHB][hapmap]
rs1884390	1.00[CHB][hapmap]
rs2064645	1.00[CHB][hapmap]
rs2064646	1.00[CHB][hapmap]
rs2249832	1.00[CHB][hapmap]
rs2250091	1.00[CHB][hapmap]
rs2256095	1.00[CHB][hapmap]
rs2256229	1.00[CHB][hapmap]
rs2256240	1.00[CHB][hapmap]
rs2256243	1.00[CHB][hapmap]
rs2256250	1.00[CHB][hapmap]
rs2256251	1.00[CHB][hapmap]
rs2263656	1.00[CHB][hapmap]
rs2873522	1.00[CHB][hapmap]
rs4536713	1.00[ASN][1000 genomes]
rs4577347	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4813115	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4814102	1.00[CHB][hapmap]
rs56035174	1.00[ASN][1000 genomes]
rs57806058	1.00[ASN][1000 genomes]
rs59377624	1.00[ASN][1000 genomes]
rs59681252	1.00[ASN][1000 genomes]
rs6033534	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033554	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6033660	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6033672	1.00[ASN][1000 genomes]
rs6033871	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6033896	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6033914	1.00[CHB][hapmap]
rs6033935	1.00[CHB][hapmap]
rs6041382	1.00[ASN][1000 genomes]
rs6041716	1.00[CHB][hapmap]
rs6041717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042000	1.00[ASN][1000 genomes]
rs6042506	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6042550	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6042568	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6042574	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6042578	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6042585	1.00[CHB][hapmap]
rs6042588	1.00[CHB][hapmap]
rs6042676	1.00[CHB][hapmap]
rs6042689	1.00[CHB][hapmap]
rs6078575	1.00[CHB][hapmap]
rs6105031	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6105101	1.00[CHB][hapmap]
rs6109437	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6109511	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6109522	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6109740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6109784	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6109984	1.00[CHB][hapmap]
rs6109989	1.00[CHB][hapmap]
rs6110189	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6110193	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs62187542	1.00[ASN][1000 genomes]
rs62187543	1.00[ASN][1000 genomes]
rs6514337	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6514364	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs715217	1.00[CHB][hapmap]
rs7271240	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73067251	1.00[ASN][1000 genomes]
rs73069188	1.00[ASN][1000 genomes]
rs73076965	1.00[ASN][1000 genomes]
rs73076966	1.00[ASN][1000 genomes]
rs73579382	1.00[ASN][1000 genomes]
rs73581208	1.00[ASN][1000 genomes]
rs747611	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8117563	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8117744	1.00[ASN][1000 genomes]
rs8118276	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8119259	1.00[ASN][1000 genomes]
rs912113	1.00[CHB][hapmap]
rs958839	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1307600-1340400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:1310000-1348800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:1321600-1340400	Weak transcription	K562	blood
4	chr20:1323000-1350600	Weak transcription	Fetal Brain Male	brain
5	chr20:1323400-1354000	Weak transcription	Fetal Heart	heart
6	chr20:1326000-1340800	Weak transcription	NHDF-Ad	bronchial
7	chr20:1326000-1350600	Weak transcription	Right Atrium	heart
8	chr20:1326800-1348200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr20:1327600-1372200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr20:1327800-1340600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr20:1330400-1340800	Weak transcription	Colon Smooth Muscle	Colon
12	chr20:1330600-1340600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr20:1331600-1349000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr20:1331600-1358200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr20:1332000-1340800	Weak transcription	Brain Substantia Nigra	brain
16	chr20:1332400-1348400	Weak transcription	Psoas Muscle	Psoas
17	chr20:1332400-1349200	Weak transcription	Colonic Mucosa	Colon
18	chr20:1333200-1349000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr20:1335400-1340400	Weak transcription	Hela-S3	cervix
20	chr20:1335800-1340400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr20:1336000-1340400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr20:1336000-1340400	Weak transcription	HMEC	breast
23	chr20:1336000-1340600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr20:1336000-1343000	Weak transcription	Gastric	stomach
25	chr20:1336000-1343800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr20:1336200-1340200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr20:1336200-1340400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr20:1336200-1340400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr20:1336200-1340600	Weak transcription	Brain Hippocampus Middle	brain
30	chr20:1336200-1340600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr20:1336200-1340800	Weak transcription	Brain Anterior Caudate	brain
32	chr20:1336200-1342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr20:1336200-1342400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr20:1336200-1348000	Weak transcription	Aorta	Aorta
35	chr20:1336200-1348000	Weak transcription	Brain Germinal Matrix	brain
36	chr20:1336200-1348000	Weak transcription	Esophagus	oesophagus
37	chr20:1336200-1350600	Weak transcription	Right Ventricle	heart
38	chr20:1336200-1361800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr20:1336400-1340200	Weak transcription	Spleen	Spleen
40	chr20:1336400-1340400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr20:1336400-1341000	Weak transcription	Ovary	ovary
42	chr20:1336400-1350600	Weak transcription	Fetal Lung	lung
43	chr20:1336400-1355600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr20:1336400-1370400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr20:1337000-1343000	Strong transcription	HUVEC	blood vessel
46	chr20:1337600-1343000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr20:1337600-1349400	Strong transcription	Fetal Muscle Leg	muscle
48	chr20:1337800-1341800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr20:1337800-1348000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr20:1338000-1342800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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