The 2.0 version of rSNPBase

Variant report

Variant rs11087048
Chromosome Location chr20:1377570-1377571
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1374400-1379600 Weak transcription Placenta Amnion Placenta Amnion
2 chr20:1374400-1381400 Weak transcription Gastric stomach
3 chr20:1374600-1377600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr20:1374600-1378000 Enhancers Primary hematopoietic stem cells short term culture blood
5 chr20:1374600-1378600 Weak transcription K562 blood
6 chr20:1374600-1378800 Weak transcription Duodenum Mucosa Duodenum
7 chr20:1374600-1379000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr20:1374600-1379400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr20:1374600-1380000 Weak transcription Liver Liver
10 chr20:1374600-1380200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr20:1374800-1379400 Weak transcription Colonic Mucosa Colon
12 chr20:1374800-1382800 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr20:1374800-1383000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr20:1375200-1379400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr20:1375400-1379000 Enhancers Primary neutrophils fromperipheralblood blood
16 chr20:1376000-1379200 Enhancers Dnd41 blood
17 chr20:1376200-1378800 Weak transcription Primary B cells from peripheral blood blood
18 chr20:1376600-1377800 Weak transcription Lung lung
19 chr20:1376800-1377600 Enhancers NHEK skin
20 chr20:1377000-1377600 Enhancers Primary T helper cells fromperipheralblood blood
21 chr20:1377000-1377600 Enhancers HMEC breast
22 chr20:1377000-1377800 Enhancers Primary T helper cells PMA-I stimulated --
23 chr20:1377000-1377800 Enhancers Primary T helper 17 cells PMA-I stimulated --
24 chr20:1377000-1378000 Enhancers Primary T helper naive cells fromperipheralblood blood
25 chr20:1377200-1377600 Flanking Active TSS HUVEC blood vessel
26 chr20:1377400-1377800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr20:1377400-1378000 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr20:1377400-1378000 Enhancers Fetal Thymus thymus
29 chr20:1377400-1378200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr20:1377400-1379600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015