The 2.0 version of rSNPBase

Variant report

Variant rs73579382
Chromosome Location chr20:1298954-1298955
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1283800-1301800 Weak transcription HSMMtube muscle
2 chr20:1284200-1303600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr20:1289600-1305000 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr20:1293400-1302200 Weak transcription Esophagus oesophagus
5 chr20:1294000-1299200 Weak transcription Duodenum Mucosa Duodenum
6 chr20:1294200-1299600 Weak transcription Fetal Intestine Large intestine
7 chr20:1294200-1301600 Weak transcription Spleen Spleen
8 chr20:1294200-1302000 Weak transcription Gastric stomach
9 chr20:1294200-1302200 Weak transcription Pancreas Pancrea
10 chr20:1294200-1305600 Weak transcription Ovary ovary
11 chr20:1294400-1300000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr20:1294400-1301600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr20:1294400-1304800 Weak transcription Placenta Placenta
14 chr20:1294600-1299600 Weak transcription Muscle Satellite Cultured Cells --
15 chr20:1294600-1302800 Weak transcription NHEK skin
16 chr20:1294600-1305200 Weak transcription Colon Smooth Muscle Colon
17 chr20:1294600-1305200 Weak transcription Fetal Thymus thymus
18 chr20:1294600-1305400 Weak transcription Colonic Mucosa Colon
19 chr20:1294800-1302200 Weak transcription Adipose Nuclei Adipose
20 chr20:1294800-1305200 Weak transcription Dnd41 blood
21 chr20:1295000-1300800 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr20:1295000-1302200 Weak transcription Stomach Mucosa stomach
23 chr20:1295000-1302200 Weak transcription HUVEC blood vessel
24 chr20:1296000-1301800 Strong transcription Fetal Intestine Small intestine
25 chr20:1297400-1300800 Strong transcription Rectal Mucosa Donor 31 rectum
26 chr20:1297600-1299000 Strong transcription Sigmoid Colon Sigmoid Colon
27 chr20:1297800-1299000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr20:1298200-1299000 Enhancers Liver Liver
29 chr20:1298200-1299000 Enhancers GM12878-XiMat blood
30 chr20:1298200-1300400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
31 chr20:1298400-1299000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr20:1298400-1299200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr20:1298600-1299000 Enhancers NHDF-Ad bronchial
34 chr20:1298600-1299600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr20:1298600-1300200 Enhancers Osteobl bone
36 chr20:1298600-1302800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr20:1298600-1302800 Weak transcription NHLF lung
38 chr20:1298600-1305000 Weak transcription A549 lung
39 chr20:1298800-1299200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
40 chr20:1298800-1299200 Bivalent Enhancer HepG2 liver
41 chr20:1298800-1300000 Weak transcription Lung lung
42 chr20:1298800-1300400 Strong transcription Rectal Mucosa Donor 29 rectum
43 chr20:1298800-1300600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
44 chr20:1298800-1302200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr20:1298800-1303000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr20:1298800-1303200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr20:1298800-1303800 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015