Variant report

Variant	rs11708417
Chromosome Location	chr3:180058671-180058672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10937033	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10937035	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10937036	0.89[EUR][1000 genomes]
rs11710138	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11712424	0.81[EUR][1000 genomes]
rs11713709	0.81[EUR][1000 genomes]
rs11719620	0.81[EUR][1000 genomes]
rs11719763	0.81[EUR][1000 genomes]
rs11720361	0.81[EUR][1000 genomes]
rs11720852	0.81[EUR][1000 genomes]
rs11916013	0.81[EUR][1000 genomes]
rs11924813	0.81[EUR][1000 genomes]
rs13322134	1.00[ASN][1000 genomes]
rs1543266	1.00[ASN][1000 genomes]
rs16831374	0.81[EUR][1000 genomes]
rs16831394	0.88[EUR][1000 genomes]
rs16831521	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17695226	0.81[EUR][1000 genomes]
rs57987078	0.81[EUR][1000 genomes]
rs73033562	0.89[EUR][1000 genomes]
rs73044393	0.88[EUR][1000 genomes]
rs73065358	0.81[EUR][1000 genomes]
rs73883851	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878041	chr3:179983857-180097855	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180049800-180061200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:180057800-180060200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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