Variant report
| Variant | rs10937036 |
|---|---|
| Chromosome Location | chr3:180097616-180097617 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10937033 | 1.00[EUR][1000 genomes] |
| rs10937035 | 1.00[EUR][1000 genomes] |
| rs11708417 | 0.89[EUR][1000 genomes] |
| rs11710138 | 0.96[EUR][1000 genomes] |
| rs11712424 | 0.90[EUR][1000 genomes] |
| rs11713709 | 0.90[EUR][1000 genomes] |
| rs11719620 | 0.90[EUR][1000 genomes] |
| rs11719763 | 0.90[EUR][1000 genomes] |
| rs11720361 | 0.90[EUR][1000 genomes] |
| rs11720852 | 0.90[EUR][1000 genomes] |
| rs11916013 | 0.90[EUR][1000 genomes] |
| rs11924813 | 0.90[EUR][1000 genomes] |
| rs16831374 | 0.91[EUR][1000 genomes] |
| rs16831394 | 0.98[EUR][1000 genomes] |
| rs16831521 | 1.00[EUR][1000 genomes] |
| rs17695226 | 0.91[EUR][1000 genomes] |
| rs35888957 | 0.87[EUR][1000 genomes] |
| rs57987078 | 0.99[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs58686005 | 0.87[EUR][1000 genomes] |
| rs73033562 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73044393 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73065358 | 0.91[EUR][1000 genomes] |
| rs73883851 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012271 | chr3:179806875-180234871 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv878040 | chr3:179823887-180128288 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv997388 | chr3:179899279-180172349 | Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv536817 | chr3:179899279-180172349 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv878041 | chr3:179983857-180097855 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:180086200-180099600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
