Variant report

Variant	rs58686005
Chromosome Location	chr3:180152951-180152952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10937033	0.87[EUR][1000 genomes]
rs10937035	0.87[EUR][1000 genomes]
rs10937036	0.87[EUR][1000 genomes]
rs11708495	0.81[EUR][1000 genomes]
rs11710138	0.84[EUR][1000 genomes]
rs11711462	0.81[EUR][1000 genomes]
rs11712424	0.92[EUR][1000 genomes]
rs11713709	0.92[EUR][1000 genomes]
rs11718627	0.81[EUR][1000 genomes]
rs11719620	0.92[EUR][1000 genomes]
rs11719763	0.92[EUR][1000 genomes]
rs11720361	0.92[EUR][1000 genomes]
rs11720852	0.92[EUR][1000 genomes]
rs11916013	0.92[EUR][1000 genomes]
rs11924813	0.92[EUR][1000 genomes]
rs16831394	0.85[EUR][1000 genomes]
rs16831521	0.87[EUR][1000 genomes]
rs35888957	0.89[EUR][1000 genomes]
rs57987078	0.81[EUR][1000 genomes]
rs73033562	0.87[EUR][1000 genomes]
rs73044393	0.85[EUR][1000 genomes]
rs73883851	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180152200-180153200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:180152200-180153200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:180152400-180153400	Weak transcription	NHEK	skin
4	chr3:180152600-180153000	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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