Variant report

Variant	rs11708495
Chromosome Location	chr3:180292831-180292832
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11711462	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11712424	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11713709	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11718627	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11719620	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11719763	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11720361	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11720852	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11916013	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11924813	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11926211	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs35888957	0.84[EUR][1000 genomes]
rs58686005	0.81[EUR][1000 genomes]
rs73044393	0.81[EUR][1000 genomes]
rs73883851	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180285600-180293200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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