Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10937033	0.90[EUR][1000 genomes]
rs10937035	0.90[EUR][1000 genomes]
rs10937036	0.90[EUR][1000 genomes]
rs11705819	0.89[CEU][hapmap]
rs11708417	0.81[EUR][1000 genomes]
rs11708495	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11710138	0.87[EUR][1000 genomes]
rs11711462	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11713709	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11718627	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11719620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11719763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11720361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11720852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11916013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926211	1.00[CEU][hapmap]
rs11928576	0.89[CEU][hapmap]
rs16831374	0.81[EUR][1000 genomes]
rs16831394	0.89[EUR][1000 genomes]
rs16831521	0.90[EUR][1000 genomes]
rs17695226	0.81[EUR][1000 genomes]
rs35888957	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57987078	0.84[EUR][1000 genomes]
rs58686005	0.92[EUR][1000 genomes]
rs73033562	0.90[EUR][1000 genomes]
rs73044393	0.89[EUR][1000 genomes]
rs73065358	0.81[EUR][1000 genomes]
rs73883851	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180176000-180187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:180183800-180186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:180184600-180185400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:180184600-180186000	Enhancers	HMEC	breast
5	chr3:180184800-180185600	Enhancers	Muscle Satellite Cultured Cells	--

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