Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10937025	0.82[EUR][1000 genomes]
rs10937033	0.98[EUR][1000 genomes]
rs10937035	0.98[EUR][1000 genomes]
rs10937036	0.98[EUR][1000 genomes]
rs11705819	0.89[CEU][hapmap];0.93[GIH][hapmap];0.81[EUR][1000 genomes]
rs11708417	0.88[EUR][1000 genomes]
rs11710138	0.94[EUR][1000 genomes]
rs11712424	0.89[EUR][1000 genomes]
rs11713709	0.89[EUR][1000 genomes]
rs11719620	0.89[EUR][1000 genomes]
rs11719763	0.89[EUR][1000 genomes]
rs11720361	0.89[EUR][1000 genomes]
rs11720852	0.89[EUR][1000 genomes]
rs11916013	0.89[EUR][1000 genomes]
rs11921783	0.81[EUR][1000 genomes]
rs11921855	0.81[EUR][1000 genomes]
rs11924813	0.89[EUR][1000 genomes]
rs11925406	0.81[EUR][1000 genomes]
rs11928576	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs11929432	0.82[EUR][1000 genomes]
rs16831291	0.82[EUR][1000 genomes]
rs16831374	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16831521	0.98[EUR][1000 genomes]
rs17695226	0.92[EUR][1000 genomes]
rs28828972	0.82[EUR][1000 genomes]
rs35888957	0.85[EUR][1000 genomes]
rs3849422	0.82[EUR][1000 genomes]
rs3849423	0.82[EUR][1000 genomes]
rs57987078	0.89[EUR][1000 genomes]
rs58686005	0.85[EUR][1000 genomes]
rs73033562	0.98[EUR][1000 genomes]
rs73044393	0.96[EUR][1000 genomes]
rs73065342	0.82[EUR][1000 genomes]
rs73065358	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73883851	0.92[EUR][1000 genomes]
rs9817362	0.82[EUR][1000 genomes]
rs9849772	0.81[EUR][1000 genomes]
rs9867478	0.81[EUR][1000 genomes]
rs9870444	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878041	chr3:179983857-180097855	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180024800-180039000	Weak transcription	Ovary	ovary
2	chr3:180028600-180029400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:180028800-180030200	Enhancers	HMEC	breast
4	chr3:180029000-180030000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: