Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10937033	0.87[EUR][1000 genomes]
rs10937035	0.87[EUR][1000 genomes]
rs10937036	0.87[EUR][1000 genomes]
rs11708495	0.84[EUR][1000 genomes]
rs11710138	0.83[EUR][1000 genomes]
rs11711462	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11712424	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11713709	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11718627	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11719620	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11719763	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11720361	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11720852	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11916013	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11924813	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16831394	0.85[EUR][1000 genomes]
rs16831521	0.87[EUR][1000 genomes]
rs57987078	0.81[EUR][1000 genomes]
rs58686005	0.89[EUR][1000 genomes]
rs73033562	0.87[EUR][1000 genomes]
rs73044393	0.85[EUR][1000 genomes]
rs73883851	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3393709	chr3:180202886-180205051	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180187400-180205600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:180200000-180208400	Weak transcription	HMEC	breast
3	chr3:180201800-180208400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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