Variant report

Variant	rs73883851
Chromosome Location	chr3:180122188-180122189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10937033	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10937035	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10937036	0.94[EUR][1000 genomes]
rs11708417	0.84[EUR][1000 genomes]
rs11708495	0.84[EUR][1000 genomes]
rs11710138	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11711462	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11712424	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11713709	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11718627	0.84[EUR][1000 genomes]
rs11719620	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11719763	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11720361	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11720852	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11916013	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11924813	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16831374	0.85[EUR][1000 genomes]
rs16831394	0.92[EUR][1000 genomes]
rs16831521	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17695226	0.85[EUR][1000 genomes]
rs35888957	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57987078	0.88[EUR][1000 genomes]
rs58686005	0.92[EUR][1000 genomes]
rs73033562	0.94[EUR][1000 genomes]
rs73044393	0.92[EUR][1000 genomes]
rs73065358	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180119000-180122200	Enhancers	HMEC	breast
2	chr3:180120800-180126400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:180121200-180126200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:180121600-180126400	Weak transcription	NHEK	skin
5	chr3:180121800-180122400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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