Variant report

Variant	rs11711462
Chromosome Location	chr3:180249628-180249629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11708495	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11712424	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11713709	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11718627	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11719620	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11719763	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11720361	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11720852	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11916013	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11924813	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35888957	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58686005	0.81[EUR][1000 genomes]
rs73044393	0.81[EUR][1000 genomes]
rs73883851	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180249600-180250200	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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