Variant report

Variant	rs16831374
Chromosome Location	chr3:180018650-180018651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:180018402..180020222-chr3:180021052..180022937,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10937025	0.89[EUR][1000 genomes]
rs10937033	0.91[EUR][1000 genomes]
rs10937035	0.91[EUR][1000 genomes]
rs10937036	0.91[EUR][1000 genomes]
rs11705819	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[ASN][1000 genomes]
rs11708417	0.81[EUR][1000 genomes]
rs11710138	0.87[EUR][1000 genomes]
rs11712424	0.81[EUR][1000 genomes]
rs11713709	0.81[EUR][1000 genomes]
rs11719620	0.81[EUR][1000 genomes]
rs11719763	0.81[EUR][1000 genomes]
rs11720361	0.81[EUR][1000 genomes]
rs11916013	0.81[EUR][1000 genomes]
rs11919997	0.82[EUR][1000 genomes]
rs11921783	0.95[ASN][1000 genomes]
rs11921855	1.00[ASN][1000 genomes]
rs11925406	1.00[ASN][1000 genomes]
rs11928576	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11929432	0.89[EUR][1000 genomes]
rs1525275	0.82[EUR][1000 genomes]
rs16831291	0.89[EUR][1000 genomes]
rs16831394	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16831521	0.91[EUR][1000 genomes]
rs17695226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28828972	0.89[EUR][1000 genomes]
rs3849422	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3849423	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57987078	0.81[EUR][1000 genomes]
rs73033562	0.91[EUR][1000 genomes]
rs73044393	0.89[EUR][1000 genomes]
rs73065312	0.85[EUR][1000 genomes]
rs73065331	0.84[EUR][1000 genomes]
rs73065342	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73883851	0.85[EUR][1000 genomes]
rs7647413	0.82[EUR][1000 genomes]
rs9817362	0.89[EUR][1000 genomes]
rs9817801	0.85[EUR][1000 genomes]
rs9822150	0.82[EUR][1000 genomes]
rs9869409	0.85[EUR][1000 genomes]
rs9870444	0.89[EUR][1000 genomes]
rs9875212	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878041	chr3:179983857-180097855	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180014200-180024000	Weak transcription	HMEC	breast
2	chr3:180014600-180024200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:180016600-180024400	Weak transcription	Ovary	ovary

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