Variant report

Variant	rs11715391
Chromosome Location	chr3:52280378-52280379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:40)
CpG islands
(count:61)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:40 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:52279597-52280387	H1-hESC	embryonic stem cell:	n/a	n/a
2	ESR1	chr3:52280024-52280392	ECC-1	luminal epithelium:	n/a	n/a
3	MAX	chr3:52279453-52280393	H1-hESC	embryonic stem cell:	n/a	chr3:52279824-52279834
4	TBP	chr3:52279913-52280396	H1-hESC	embryonic stem cell:	n/a	n/a
5	MTA3	chr3:52279829-52280831	GM12878	blood:	n/a	n/a
6	ESR1	chr3:52280021-52280379	T-47D	breast:	n/a	n/a
7	POLR2A	chr3:52279555-52280480	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr3:52277954-52280665	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:52279887-52284777	Hela-S3	cervix:	n/a	n/a
10	MAX	chr3:52279337-52280574	H1-hESC	embryonic stem cell:	n/a	chr3:52279824-52279834
11	POLR2A	chr3:52277713-52280381	GM18505	blood:	n/a	n/a
12	POLR2A	chr3:52280328-52280688	Hela-S3	cervix:	n/a	n/a
13	YY1	chr3:52279695-52280378	H1-hESC	embryonic stem cell:	n/a	chr3:52279823-52279834 chr3:52279860-52279874
14	POLR2A	chr3:52279671-52280582	HepG2	liver:	n/a	n/a
15	POLR2A	chr3:52279839-52280545	H1-neurons	neurons:	n/a	n/a
16	ESR1	chr3:52280017-52280400	ECC-1	luminal epithelium:	n/a	n/a
17	STAT5A	chr3:52279913-52280408	GM12878	blood:	n/a	chr3:52280073-52280085
18	ESR1	chr3:52279945-52280471	ECC-1	luminal epithelium:	n/a	n/a
19	GTF2F1	chr3:52280144-52280488	Hela-S3	cervix:	n/a	n/a
20	MAX	chr3:52279457-52280385	A549	lung:	n/a	chr3:52279824-52279834
21	POLR2A	chr3:52278927-52280465	GM12891	blood:	n/a	n/a
22	POLR2A	chr3:52277466-52280409	GM12892	blood:	n/a	n/a
23	ESR1	chr3:52279991-52280456	T-47D	breast:	n/a	n/a
24	SIN3A	chr3:52279434-52280420	H1-hESC	embryonic stem cell:	n/a	chr3:52279823-52279834 chr3:52279685-52279696
25	POLR2A	chr3:52277873-52280423	GM12892	blood:	n/a	n/a
26	ESR1	chr3:52280008-52280535	T-47D	breast:	n/a	n/a
27	POLR2A	chr3:52279882-52280405	SK-N-SH	brain:	n/a	n/a
28	MAX	chr3:52279318-52280420	HepG2	liver:	n/a	chr3:52279824-52279834
29	ESR1	chr3:52280004-52280455	T-47D	breast:	n/a	n/a
30	POLR2A	chr3:52279343-52280576	HUVEC	blood vessel:	n/a	n/a
31	E2F6	chr3:52279655-52280512	H1-hESC	embryonic stem cell:	n/a	chr3:52279827-52279837
32	POLR2A	chr3:52279680-52280476	HCT-116	colon:	n/a	n/a
33	ZBTB7A	chr3:52279336-52280530	ECC-1	luminal epithelium:	n/a	n/a
34	MAX	chr3:52279350-52280479	HepG2	liver:	n/a	chr3:52279824-52279834
35	POLR2A	chr3:52279635-52280396	K562	blood:	n/a	n/a
36	MXI1	chr3:52279190-52280721	IMR90	lung:	n/a	n/a
37	ELF1	chr3:52277982-52280579	GM12878	blood:	n/a	chr3:52279864-52279877
38	SIN3AK20	chr3:52279855-52280392	H1-hESC	embryonic stem cell:	n/a	n/a
39	PML	chr3:52279857-52280421	GM12878	blood:	n/a	n/a
40	POLR2A	chr3:52279459-52280415	ECC-1	luminal epithelium:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:52280329-52280379	IMR90	lung:	fetal
2	chr3:52280329-52280379	H1-hESC	embryonic stem cell:	embryo
3	chr3:52280329-52280379	HCT-116	colon:	n/a
4	chr3:52280329-52280379	NT2-D1	testis:	n/a
5	chr3:52280329-52280379	MCF10A-Er-Src	breast:	n/a
6	chr3:52280329-52280379	ECC-1	luminal epithelium:	n/a
7	chr3:52280329-52280379	BJ	skin:	n/a
8	chr3:52280329-52280379	HRE	kidney:	n/a
9	chr3:52280329-52280379	HEEpiC	esophagus:	n/a
10	chr3:52280329-52280379	HCF	heart:	n/a
11	chr3:52280329-52280379	SK-N-MC	brain:	n/a
12	chr3:52280329-52280379	HUVEC	blood vessel:	n/a
13	chr3:52280329-52280379	NHDF-neo	bronchial:	n/a
14	chr3:52280329-52280379	Hepatocyte	liver:	n/a
15	chr3:52280329-52280379	SKMC	muscle:	n/a
16	chr3:52280329-52280379	HNPCEpiC	eye:	n/a
17	chr3:52280329-52280379	HL-60	blood:	n/a
18	chr3:52280329-52280379	RPTEC	kidney:	n/a
19	chr3:52280329-52280379	HRCEpiC	kidney:	n/a
20	chr3:52280329-52280379	GM12891	blood:	n/a
21	chr3:52280329-52280379	Jurkat	blood:	n/a
22	chr3:52280329-52280379	Hela-S3	cervix:	n/a
23	chr3:52280329-52280379	AG04449	skin:	fetal
24	chr3:52280329-52280379	U87	brain:	n/a
25	chr3:52280329-52280379	NHBE	bronchial:	n/a
26	chr3:52280329-52280379	AoSMC	blood vessel:	n/a
27	chr3:52280329-52280379	HCPEpiC	choroid plexus:	n/a
28	chr3:52280329-52280379	AG09319	gingival:	n/a
29	chr3:52280329-52280379	T-47D	breast:	n/a
30	chr3:52280329-52280379	HCM	heart:	n/a
31	chr3:52280329-52280379	PANC-1	pancreas:	n/a
32	chr3:52280329-52280379	K562	blood:	n/a
33	chr3:52280329-52280379	HRPEpiC	eye:	n/a
34	chr3:52280329-52280379	HPAEpiC	pulmonary alveolar:	n/a
35	chr3:52280329-52280379	CMK	blood:	n/a
36	chr3:52280329-52280379	HepG2	liver:	n/a
37	chr3:52280329-52280379	HEK293	kidney:	embryo
38	chr3:52280329-52280379	GM12892	blood:	n/a
39	chr3:52280329-52280379	HIPEpiC	eye:	n/a
40	chr3:52280329-52280379	GM06990	blood:	n/a
41	chr3:52280329-52280379	GM19239	blood:	n/a
42	chr3:52280329-52280379	SAEC	small airway:	n/a
43	chr3:52280329-52280379	PFSK-1	brain:	n/a
44	chr3:52280329-52280379	NB4	blood:	n/a
45	chr3:52280329-52280379	ProgFib	skin:	n/a
46	chr3:52280329-52280379	MCF-7	breast:	n/a
47	chr3:52280329-52280379	ovcar-3	ovarian:	n/a
48	chr3:52280329-52280379	LNCaP	prostate:	n/a
49	chr3:52280329-52280379	HMEC	breast:	n/a
50	chr3:52280329-52280379	NH-A	brain:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52278055..52281861-chr3:52310588..52314481,6	K562	blood:
2	chr3:52278277..52281486-chr3:52282865..52288389,9	K562	blood:
3	chr3:52278055..52281861-chr3:52310505..52315451,9	K562	blood:
4	chr3:52280316..52283002-chr3:52418190..52421140,2	K562	blood:
5	chr3:52278407..52281355-chr3:52281666..52283628,3	MCF-7	breast:
6	chr3:52279829..52282973-chr3:52309699..52312689,5	MCF-7	breast:
7	chr3:52278070..52281652-chr3:52320199..52323338,4	MCF-7	breast:
8	chr3:52278312..52281288-chr3:52312020..52314246,3	MCF-7	breast:

No data

Variant related genes	Relation type
PPM1M	TF binding region
PPM1M	CpG island
ENSG00000164091	Chromatin interaction
ENSG00000168237	Chromatin interaction
ENSG00000114841	Chromatin interaction
ENSG00000164088	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10460962	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10461027	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10461028	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11706515	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11706541	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11707056	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes]
rs11708581	0.91[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11708811	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs11710014	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11711914	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11711974	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11713464	0.86[AMR][1000 genomes]
rs11713914	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11714358	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11715208	0.97[EUR][1000 genomes]
rs11715382	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11716487	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs11717028	0.94[EUR][1000 genomes]
rs11718125	0.81[LWK][hapmap]
rs11718729	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11719760	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11720365	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11721277	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13075370	0.85[LWK][hapmap]
rs17052051	1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17052052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17052053	0.91[CEU][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17052054	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1767	0.91[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1769	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35976326	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3733063	0.94[ASW][hapmap];0.91[CEU][hapmap];0.85[LWK][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3886875	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs4082828	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55676974	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55806905	0.91[EUR][1000 genomes]
rs55813842	0.91[EUR][1000 genomes]
rs55847657	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56002041	0.91[EUR][1000 genomes]
rs56322342	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56352611	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56899118	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57849650	0.91[EUR][1000 genomes]
rs58531656	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58879205	0.86[AMR][1000 genomes]
rs60382084	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61644644	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6445385	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6783652	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6793317	0.91[CEU][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6809248	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs729555	1.00[CEU][hapmap]
rs73072990	0.85[EUR][1000 genomes]
rs73088773	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088783	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73088785	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73088791	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73088800	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73091166	0.91[EUR][1000 genomes]
rs73091168	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs746239	0.91[EUR][1000 genomes]
rs7615405	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7628461	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7633687	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7638204	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7643913	0.86[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519445	chr3:52004317-52367932	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv984541	chr3:52055970-52285682	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv470572	chr3:52123313-52350212	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	103 gene(s)	inside rSNPs	diseases
4	nsv460537	chr3:52148233-52290550	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv590301	chr3:52148233-52290550	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv508218	chr3:52155869-52290410	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv834694	chr3:52178983-52335821	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
8	nsv834695	chr3:52199701-52400577	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	98 gene(s)	inside rSNPs	diseases
9	nsv876787	chr3:52236762-52367932	Genic enhancers Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	90 gene(s)	inside rSNPs	diseases
10	nsv876788	chr3:52247110-52367932	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	90 gene(s)	inside rSNPs	diseases
11	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
12	nsv876790	chr3:52261382-52286825	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	nsv876791	chr3:52269491-52286825	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
14	esv3369308	chr3:52279062-52280960	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs11715391	PPM1M	cis	Artery Tibial	GTEx
rs11715391	ZNF589	cis	cerebellum	SCAN
rs11715391	PPM1M	cis	parietal	SCAN
rs11715391	DNAH1	cis	cerebellum	SCAN
rs11715391	DNAH1	cis	parietal	SCAN
rs11715391	TKT	cis	cerebellum	SCAN
rs11715391	MST1	cis	parietal	SCAN
rs11715391	SEMA3G	cis	cerebellum	SCAN
rs11715391	NISCH	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52277600-52282000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr3:52278400-52280600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:52278800-52280800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:52278800-52281400	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr3:52279000-52280400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:52279000-52280400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr3:52279000-52280600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr3:52279000-52280600	Enhancers	Fetal Heart	heart
9	chr3:52279000-52281400	Flanking Active TSS	Dnd41	blood
10	chr3:52279000-52281400	Active TSS	Osteobl	bone
11	chr3:52279000-52281800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:52279200-52280400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:52279200-52280400	Active TSS	Aorta	Aorta
14	chr3:52279200-52280400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:52279200-52280400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr3:52279200-52280600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr3:52279200-52280600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
18	chr3:52279200-52280600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
19	chr3:52279200-52280600	Active TSS	Fetal Kidney	kidney
20	chr3:52279200-52280800	Active TSS	Right Atrium	heart
21	chr3:52279400-52280400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:52279400-52280400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr3:52279400-52280400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:52279400-52280400	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr3:52279400-52280400	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr3:52279400-52280400	Active TSS	Lung	lung
27	chr3:52279400-52280400	Active TSS	NHDF-Ad	bronchial
28	chr3:52279400-52280600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:52279400-52281000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:52279600-52280400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:52279600-52280400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:52279600-52280400	Active TSS	Brain Angular Gyrus	brain
33	chr3:52279600-52280400	Active TSS	Esophagus	oesophagus
34	chr3:52279600-52280400	Active TSS	NH-A	brain
35	chr3:52279600-52280600	Active TSS	Brain Cingulate Gyrus	brain
36	chr3:52279600-52280600	Bivalent/Poised TSS	Fetal Brain Female	brain
37	chr3:52279600-52280600	Active TSS	Sigmoid Colon	Sigmoid Colon
38	chr3:52279600-52280600	Active TSS	HSMMtube	muscle
39	chr3:52279600-52281000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:52279600-52281200	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr3:52279600-52281200	Active TSS	Stomach Mucosa	stomach
42	chr3:52279600-52281600	Active TSS	Brain Substantia Nigra	brain
43	chr3:52279600-52287400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:52279800-52280400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr3:52279800-52280600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr3:52279800-52280600	Enhancers	Primary hematopoietic stem cells	blood
47	chr3:52280000-52280400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:52280000-52280400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr3:52280000-52280400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:52280000-52280400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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