Variant report
| Variant | rs11717028 |
|---|---|
| Chromosome Location | chr3:52354061-52354062 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:52328200-52366000 | Weak transcription | Brain Angular Gyrus | brain |
| 2 | chr3:52328800-52367600 | Weak transcription | Brain Substantia Nigra | brain |
| 3 | chr3:52330400-52378600 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 4 | chr3:52344600-52378600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 5 | chr3:52349000-52357200 | Weak transcription | HepG2 | liver |
| 6 | chr3:52350600-52362400 | Weak transcription | Brain Cingulate Gyrus | brain |
| 7 | chr3:52351800-52354200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 8 | chr3:52352000-52356200 | Weak transcription | K562 | blood |
| 9 | chr3:52352000-52356800 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
| 10 | chr3:52352000-52360600 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 11 | chr3:52352000-52361400 | Weak transcription | Brain Hippocampus Middle | brain |
| 12 | chr3:52352000-52362200 | Weak transcription | Thymus | Thymus |
| 13 | chr3:52352000-52365000 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 14 | chr3:52352000-52365200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 15 | chr3:52352000-52365800 | Weak transcription | Aorta | Aorta |
| 16 | chr3:52352000-52367600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 17 | chr3:52352000-52379800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 18 | chr3:52352200-52357600 | Weak transcription | Duodenum Mucosa | Duodenum |
| 19 | chr3:52352200-52357600 | Weak transcription | Fetal Intestine Large | intestine |
| 20 | chr3:52352200-52357800 | Weak transcription | Ovary | ovary |
| 21 | chr3:52352200-52362000 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
| 22 | chr3:52352200-52364800 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
| 23 | chr3:52352200-52370800 | Weak transcription | Primary hematopoietic stem cells | blood |
| 24 | chr3:52352200-52379000 | Weak transcription | Colonic Mucosa | Colon |
| 25 | chr3:52352200-52382000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 26 | chr3:52352200-52384600 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
| 27 | chr3:52352400-52357400 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
| 28 | chr3:52352400-52360000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 29 | chr3:52352400-52360800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 30 | chr3:52352400-52361200 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 31 | chr3:52352400-52364600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 32 | chr3:52352400-52364800 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 33 | chr3:52352400-52365200 | Weak transcription | Placenta | Placenta |
| 34 | chr3:52352400-52366000 | Weak transcription | Primary B cells from peripheral blood | blood |
| 35 | chr3:52352400-52366000 | Weak transcription | Adipose Nuclei | Adipose |
| 36 | chr3:52352400-52366200 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
| 37 | chr3:52352600-52354200 | Weak transcription | Fetal Muscle Trunk | muscle |
| 38 | chr3:52352600-52355600 | Weak transcription | Fetal Intestine Small | intestine |
| 39 | chr3:52352600-52356000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 40 | chr3:52352600-52356400 | Weak transcription | Primary B cells from cord blood | blood |
| 41 | chr3:52352600-52356800 | Weak transcription | Primary T cells fromperipheralblood | blood |
| 42 | chr3:52352600-52357600 | Weak transcription | Lung | lung |
| 43 | chr3:52352600-52357600 | Weak transcription | Right Ventricle | heart |
| 44 | chr3:52352600-52357800 | Weak transcription | Fetal Heart | heart |
| 45 | chr3:52352600-52362000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 46 | chr3:52352600-52362600 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 47 | chr3:52352600-52365400 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 48 | chr3:52352600-52373400 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
| 49 | chr3:52352600-52379400 | Weak transcription | Pancreas | Pancrea |
| 50 | chr3:52352800-52354400 | Strong transcription | Primary T cells from cord blood | blood |
