Variant report

Variant	rs7628461
Chromosome Location	chr3:52272028-52272029
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr3:52271981-52273609	HepG2	liver:	n/a	n/a
2	CTCF	chr3:52271980-52272130	Caco-2	colon:	n/a	n/a
3	NFIC	chr3:52271956-52272560	HepG2	liver:	n/a	n/a
4	STAT5A	chr3:52271992-52272888	GM12878	blood:	n/a	chr3:52272099-52272111
5	TCF12	chr3:52271423-52272170	ECC-1	luminal epithelium:	n/a	chr3:52272034-52272044
6	POLR2A	chr3:52271906-52272053	Hela-S3	cervix:	n/a	n/a
7	MXI1	chr3:52271953-52272073	H1-hESC	embryonic stem cell:	n/a	n/a
8	YY1	chr3:52271462-52272070	ECC-1	luminal epithelium:	n/a	chr3:52271505-52271516
9	POLR2A	chr3:52272015-52272029	K562	blood:	n/a	n/a
10	CTCF	chr3:52271880-52272030	RPTEC	kidney:	n/a	n/a
11	FOXA1	chr3:52271895-52272734	HepG2	liver:	n/a	n/a
12	TCF12	chr3:52271312-52272242	ECC-1	luminal epithelium:	n/a	chr3:52272034-52272044
13	SP1	chr3:52272021-52272726	HepG2	liver:	n/a	chr3:52272148-52272162 chr3:52272141-52272155 chr3:52272098-52272107 chr3:52272290-52272301
14	CTCF	chr3:52272000-52272150	HepG2	liver:	n/a	n/a
15	MAX	chr3:52271491-52272130	ECC-1	luminal epithelium:	n/a	chr3:52271704-52271713
16	HEY1	chr3:52271624-52272910	HepG2	liver:	n/a	n/a
17	RFX5	chr3:52271540-52272045	Hela-S3	cervix:	n/a	n/a
18	SP1	chr3:52271929-52272551	A549	lung:	n/a	chr3:52272148-52272162 chr3:52272141-52272155 chr3:52272098-52272107 chr3:52272290-52272301
19	POLR2A	chr3:52271210-52272165	HCT-116	colon:	n/a	n/a
20	HA-E2F1	chr3:52271481-52272097	MCF-7	breast:	n/a	chr3:52271792-52271802
21	SP1	chr3:52271931-52272606	H1-hESC	embryonic stem cell:	n/a	chr3:52272148-52272162 chr3:52272141-52272155 chr3:52272098-52272107 chr3:52272290-52272301
22	NR2F2	chr3:52272017-52272780	HepG2	liver:	n/a	chr3:52272301-52272316 chr3:52272399-52272414 chr3:52272297-52272312
23	POLR2A	chr3:52271840-52275220	HepG2	liver:	n/a	n/a
24	NFIC	chr3:52271399-52272337	ECC-1	luminal epithelium:	n/a	n/a
25	MYC	chr3:52271575-52273799	K562	blood:	n/a	chr3:52271704-52271713 chr3:52272927-52272937 chr3:52272941-52272951 chr3:52272692-52272702
26	RCOR1	chr3:52271497-52272509	Hela-S3	cervix:	n/a	n/a
27	CTCF	chr3:52272000-52272150	GM12878	blood:	n/a	n/a
28	SP1	chr3:52272001-52272582	H1-hESC	embryonic stem cell:	n/a	chr3:52272148-52272162 chr3:52272141-52272155 chr3:52272098-52272107 chr3:52272290-52272301
29	ZBTB7A	chr3:52271271-52272215	ECC-1	luminal epithelium:	n/a	n/a
30	MBD4	chr3:52271976-52272713	HepG2	liver:	n/a	n/a
31	EP300	chr3:52271636-52272056	SK-N-SH_RA	brain:	n/a	chr3:52271881-52271897 chr3:52271704-52271713
32	HNF4A	chr3:52271952-52272720	HepG2	liver:	n/a	chr3:52272299-52272312 chr3:52272297-52272315 chr3:52272397-52272411 chr3:52272398-52272410 chr3:52272299-52272313 chr3:52272299-52272312 chr3:52272398-52272410 chr3:52272300-52272312 chr3:52272397-52272410 chr3:52272397-52272411 chr3:52272300-52272313 chr3:52272398-52272410 chr3:52272397-52272410 chr3:52272397-52272410 chr3:52272300-52272312 chr3:52272395-52272413 chr3:52272393-52272415 chr3:52272300-52272312 chr3:52272300-52272312 chr3:52272397-52272411 chr3:52272299-52272312 chr3:52272396-52272411 chr3:52272304-52272316 chr3:52272398-52272411 chr3:52272398-52272410
33	CTCF	chr3:52272000-52272150	Caco-2	colon:	n/a	n/a
34	MYBL2	chr3:52271993-52272869	HepG2	liver:	n/a	n/a
35	SP1	chr3:52271938-52272740	A549	lung:	n/a	chr3:52272148-52272162 chr3:52272141-52272155 chr3:52272098-52272107 chr3:52272290-52272301
36	JUN	chr3:52271400-52273702	K562	blood:	n/a	chr3:52271704-52271714 chr3:52273211-52273220 chr3:52272352-52272366 chr3:52272986-52272995 chr3:52271703-52271714 chr3:52271705-52271713 chr3:52271703-52271715 chr3:52271706-52271713 chr3:52272946-52272955 chr3:52271705-52271713
37	POLR2A	chr3:52271264-52272153	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr3:52271814-52272906	HepG2	liver:	n/a	n/a
39	RCOR1	chr3:52271543-52273699	K562	blood:	n/a	n/a
40	CTCF	chr3:52271960-52272110	GM12875	blood:	n/a	n/a
41	CTCF	chr3:52272020-52272170	NB4	blood:	n/a	n/a
42	CHD2	chr3:52271601-52272093	Hela-S3	cervix:	n/a	n/a
43	MAX	chr3:52272026-52273832	HepG2	liver:	n/a	chr3:52272927-52272937 chr3:52272941-52272951 chr3:52272692-52272702
44	POLR2A	chr3:52271251-52272115	U87	brain:	n/a	n/a
45	MAX	chr3:52271427-52272158	A549	lung:	n/a	chr3:52271704-52271713
46	CTCFL	chr3:52272016-52272144	K562	blood:	n/a	n/a
47	RAD21	chr3:52271505-52272115	SK-N-SH_RA	brain:	n/a	chr3:52271679-52271689
48	NFIC	chr3:52271262-52272324	ECC-1	luminal epithelium:	n/a	n/a
49	SMARCC1	chr3:52271283-52272863	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr3:52272020-52272170	HCPEpiC	choroid plexus:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:52269274..52272214-chr3:52398381..52400803,2	K562	blood:
2	chr3:52258495..52260417-chr3:52270496..52273485,2	MCF-7	breast:
3	chr3:52259472..52263342-chr3:52269626..52274061,4	MCF-7	breast:
4	chr3:52271022..52275105-chr3:52320320..52325575,6	K562	blood:
5	chr3:52271015..52274727-chr3:52321912..52324165,4	K562	blood:
6	chr3:52271478..52274801-chr3:52443057..52446273,4	K562	blood:
7	chr3:52270811..52274971-chr3:52310538..52315239,11	K562	blood:
8	chr3:52262375..52268246-chr3:52270366..52274345,8	K562	blood:
9	chr3:52265696..52268496-chr3:52269267..52272971,4	MCF-7	breast:
10	chr3:52270811..52276588-chr3:52310648..52314131,11	K562	blood:
11	chr3:52264729..52268939-chr3:52269297..52274565,7	K562	blood:
12	chr3:52269470..52276026-chr3:52310334..52314212,10	MCF-7	breast:
13	chr3:52269533..52276077-chr3:52310385..52313504,11	MCF-7	breast:
14	chr3:52254558..52255110-chr3:52271499..52272329,2	K562	blood:

Variant related genes	Relation type
ENSG00000243224	TF binding region
ENSG00000173366	Chromatin interaction
ENSG00000163930	Chromatin interaction
ENSG00000247596	Chromatin interaction
ENSG00000239732	Chromatin interaction
ENSG00000010318	Chromatin interaction
ENSG00000164091	Chromatin interaction
ENSG00000168237	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10460962	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10461027	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs10461028	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11706515	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11706541	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11707056	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes]
rs11708581	0.91[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11708811	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11710014	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11711914	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11711974	1.00[CEU][hapmap];0.88[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11713464	0.86[AMR][1000 genomes]
rs11713914	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11714358	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11715208	0.96[EUR][1000 genomes]
rs11715382	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11715391	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11717028	0.93[EUR][1000 genomes]
rs11718125	0.81[LWK][hapmap]
rs11718729	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11719760	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11720365	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11721277	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13075370	0.85[LWK][hapmap]
rs17052051	1.00[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17052052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17052053	0.91[CEU][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17052054	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1767	0.91[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1769	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35976326	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3733063	0.94[ASW][hapmap];0.91[CEU][hapmap];0.85[LWK][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3886875	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs4082828	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676974	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55806905	0.90[EUR][1000 genomes]
rs55813842	0.90[EUR][1000 genomes]
rs55847657	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56002041	0.90[EUR][1000 genomes]
rs56322342	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56352611	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56899118	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57849650	0.90[EUR][1000 genomes]
rs58531656	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58879205	0.86[AMR][1000 genomes]
rs60382084	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61644644	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6445385	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6783652	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6793317	0.91[CEU][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6809248	0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73072990	0.84[EUR][1000 genomes]
rs73088773	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73088783	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73088785	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73088791	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73088800	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73091166	0.90[EUR][1000 genomes]
rs73091168	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs746239	0.90[EUR][1000 genomes]
rs7615405	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7633687	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7638204	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7643913	0.86[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519445	chr3:52004317-52367932	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv984541	chr3:52055970-52285682	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv470572	chr3:52123313-52350212	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	103 gene(s)	inside rSNPs	diseases
4	nsv460537	chr3:52148233-52290550	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv590301	chr3:52148233-52290550	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv508218	chr3:52155869-52290410	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv834694	chr3:52178983-52335821	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
8	nsv834695	chr3:52199701-52400577	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	98 gene(s)	inside rSNPs	diseases
9	nsv876787	chr3:52236762-52367932	Genic enhancers Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	90 gene(s)	inside rSNPs	diseases
10	nsv876788	chr3:52247110-52367932	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	90 gene(s)	inside rSNPs	diseases
11	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
12	nsv876790	chr3:52261382-52286825	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	nsv876791	chr3:52269491-52286825	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7628461	DNAH1	cis	parietal	SCAN
rs7628461	PPM1M	cis	Artery Tibial	GTEx
rs7628461	TKT	cis	cerebellum	SCAN
rs7628461	SEMA3G	cis	cerebellum	SCAN
rs7628461	PPM1M	cis	parietal	SCAN
rs7628461	MST1	cis	parietal	SCAN
rs7628461	NISCH	cis	parietal	SCAN
rs7628461	DNAH1	cis	cerebellum	SCAN
rs7628461	ZNF589	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52247800-52272200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:52266600-52272200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:52267000-52272200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:52268000-52272200	Enhancers	Fetal Brain Male	brain
5	chr3:52268400-52272200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:52269200-52272200	Enhancers	Psoas Muscle	Psoas
7	chr3:52269400-52272200	Enhancers	Ovary	ovary
8	chr3:52269400-52272400	Enhancers	Fetal Heart	heart
9	chr3:52269600-52272200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:52269600-52272400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:52269800-52272200	Weak transcription	Fetal Kidney	kidney
12	chr3:52270200-52272400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:52270200-52272800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr3:52270400-52272200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:52270400-52272400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr3:52270400-52272400	Flanking Active TSS	HepG2	liver
17	chr3:52270400-52272800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr3:52270600-52272600	Enhancers	Small Intestine	intestine
19	chr3:52270600-52272800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr3:52270600-52272800	Flanking Active TSS	Hela-S3	cervix
21	chr3:52270800-52272200	Enhancers	Gastric	stomach
22	chr3:52270800-52272600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:52270800-52272600	Flanking Active TSS	HSMM	muscle
24	chr3:52270800-52272800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr3:52270800-52272800	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr3:52270800-52272800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr3:52270800-52272800	Flanking Active TSS	HMEC	breast
28	chr3:52270800-52272800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr3:52270800-52272800	Flanking Active TSS	Osteobl	bone
30	chr3:52271000-52272200	Enhancers	H9 Cell Line	embryonic stem cell
31	chr3:52271000-52272200	Enhancers	Primary T cells from cord blood	blood
32	chr3:52271000-52272400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:52271000-52272800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr3:52271000-52272800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr3:52271000-52272800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:52271000-52272800	Flanking Active TSS	NH-A	brain
37	chr3:52271200-52272400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:52271200-52272400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
39	chr3:52271200-52272600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr3:52271200-52272600	Flanking Active TSS	GM12878-XiMat	blood
41	chr3:52271200-52272800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr3:52271200-52272800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr3:52271200-52272800	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr3:52271200-52272800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:52271200-52272800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:52271200-52272800	Flanking Active TSS	Brain Angular Gyrus	brain
47	chr3:52271200-52272800	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr3:52271200-52272800	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr3:52271200-52272800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
50	chr3:52271200-52272800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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