Variant report

Variant	rs11748722
Chromosome Location	chr5:74271028-74271029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10045282	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10066902	0.82[ASN][1000 genomes]
rs10078075	0.82[ASN][1000 genomes]
rs10805892	0.82[ASN][1000 genomes]
rs4072296	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4235682	0.82[ASN][1000 genomes]
rs4382144	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4392602	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4413513	0.82[ASN][1000 genomes]
rs4703642	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6453099	0.91[ASN][1000 genomes]
rs6453100	0.82[ASN][1000 genomes]
rs6863602	0.82[ASN][1000 genomes]
rs6867482	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6883719	0.82[ASN][1000 genomes]
rs6889166	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6898812	0.82[ASN][1000 genomes]
rs7736223	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9293637	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74255000-74272600	Weak transcription	Gastric	stomach
2	chr5:74261800-74290400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:74265800-74275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:74268600-74271400	Weak transcription	Fetal Intestine Large	intestine
5	chr5:74268800-74271400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:74269000-74272600	Weak transcription	Stomach Mucosa	stomach
7	chr5:74269200-74271600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr5:74269400-74271600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:74269400-74271600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr5:74269600-74271400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:74269600-74271400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:74269600-74271600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:74270000-74271200	Enhancers	Primary T cells from cord blood	blood
14	chr5:74271000-74271600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:74271000-74272000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:74271000-74272400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:74271000-74272400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:74271000-74272600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr5:74271000-74273600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr5:74271000-74274400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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