Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10045282	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10066902	0.91[ASN][1000 genomes]
rs10078075	0.91[ASN][1000 genomes]
rs10805892	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11748722	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4072296	0.86[EUR][1000 genomes]
rs4235682	0.91[ASN][1000 genomes]
rs4382144	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4392602	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4413513	0.91[ASN][1000 genomes]
rs4703642	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4704162	0.83[ASN][1000 genomes]
rs6453099	1.00[ASN][1000 genomes]
rs6453100	0.90[ASN][1000 genomes]
rs6863602	0.91[ASN][1000 genomes]
rs6867482	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6883719	0.91[ASN][1000 genomes]
rs6889166	0.96[EUR][1000 genomes]
rs6898812	0.91[ASN][1000 genomes]
rs7736223	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74246200-74259200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:74253600-74261400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:74253600-74269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:74254200-74262600	Weak transcription	Pancreas	Pancrea
5	chr5:74255000-74272600	Weak transcription	Gastric	stomach
6	chr5:74255200-74259200	Weak transcription	Small Intestine	intestine
7	chr5:74256000-74258800	Weak transcription	Fetal Intestine Large	intestine
8	chr5:74256000-74261800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:74256600-74258800	Weak transcription	Fetal Intestine Small	intestine
10	chr5:74258000-74258800	Weak transcription	Stomach Mucosa	stomach
11	chr5:74258000-74259000	Weak transcription	NHEK	skin

Quick Search: