Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10045282	0.83[ASN][1000 genomes]
rs10066902	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078075	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805892	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942726	0.85[ASN][1000 genomes]
rs11748722	0.82[ASN][1000 genomes]
rs12515649	0.82[ASN][1000 genomes]
rs3934476	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4235682	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4368710	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4382144	0.82[ASN][1000 genomes]
rs4392602	0.90[ASN][1000 genomes]
rs4413513	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703642	0.91[ASN][1000 genomes]
rs6453099	0.91[ASN][1000 genomes]
rs6453100	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6453102	0.88[EUR][1000 genomes]
rs6867482	0.80[ASN][1000 genomes]
rs6883719	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898812	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736223	0.91[ASN][1000 genomes]
rs9293637	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74245400-74256000	Enhancers	Fetal Intestine Large	intestine
2	chr5:74245800-74255800	Enhancers	Stomach Mucosa	stomach
3	chr5:74246200-74259200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:74246600-74255000	Enhancers	HepG2	liver
5	chr5:74246600-74256600	Enhancers	Fetal Intestine Small	intestine
6	chr5:74249600-74254400	Enhancers	Duodenum Mucosa	Duodenum
7	chr5:74252400-74254600	Weak transcription	Gastric	stomach
8	chr5:74253400-74254600	Weak transcription	NHEK	skin
9	chr5:74253600-74254400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:74253600-74261400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:74253600-74269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:74254200-74254600	Weak transcription	Small Intestine	intestine
13	chr5:74254200-74255200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:74254200-74262600	Weak transcription	Pancreas	Pancrea

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