Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10045282	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10066902	0.91[ASN][1000 genomes]
rs10078075	0.91[ASN][1000 genomes]
rs10805892	0.91[ASN][1000 genomes]
rs11748722	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4072296	0.82[EUR][1000 genomes]
rs4235682	0.91[ASN][1000 genomes]
rs4368710	0.81[AMR][1000 genomes]
rs4382144	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4392602	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4413513	0.91[ASN][1000 genomes]
rs4704162	0.83[ASN][1000 genomes]
rs6453099	1.00[ASN][1000 genomes]
rs6453100	0.90[ASN][1000 genomes]
rs6863602	0.91[ASN][1000 genomes]
rs6867482	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6883719	0.91[ASN][1000 genomes]
rs6889166	0.92[EUR][1000 genomes]
rs6898812	0.91[ASN][1000 genomes]
rs7736223	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293637	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74253600-74269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:74254200-74262600	Weak transcription	Pancreas	Pancrea
3	chr5:74255000-74272600	Weak transcription	Gastric	stomach
4	chr5:74259800-74262600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:74260800-74269000	Enhancers	Stomach Mucosa	stomach
6	chr5:74261400-74262200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:74261400-74268600	Enhancers	Fetal Intestine Large	intestine
8	chr5:74261600-74268000	Enhancers	Fetal Intestine Small	intestine
9	chr5:74261600-74268400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:74261800-74262200	Enhancers	Small Intestine	intestine
11	chr5:74261800-74262400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:74261800-74262400	Weak transcription	HepG2	liver
13	chr5:74261800-74267600	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:74261800-74290400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:74262000-74263000	Enhancers	Rectal Mucosa Donor 29	rectum

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