Variant report

Variant	rs11801586
Chromosome Location	chr1:160952666-160952667
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:160952049..160953710-chr1:160957202..160960136,2	K562	blood:
2	chr1:160939974..160941495-chr1:160951029..160953259,2	MCF-7	breast:
3	chr1:160948860..160950429-chr1:160950620..160952705,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1044478	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1062826	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1062827	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11265540	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11265542	0.84[AMR][1000 genomes]
rs11799478	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11799521	0.84[AMR][1000 genomes]
rs11801591	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11802727	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11802731	0.88[EUR][1000 genomes]
rs11805856	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11807930	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12401336	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12403886	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12405782	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12408778	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12565932	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17388108	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1806774	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2073656	0.81[AMR][1000 genomes]
rs2073658	0.81[AMR][1000 genomes]
rs2243427	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2247459	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2247596	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2247671	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2247790	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2251597	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2251728	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2297219	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2297220	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2297221	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2297222	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2481080	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2481081	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2481083	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2481084	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2481085	0.84[AMR][1000 genomes]
rs2483145	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2774274	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2988726	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3119321	0.84[AMR][1000 genomes]
rs35923797	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3737785	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41267947	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41267949	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41267951	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41269993	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4339888	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61802226	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61802227	0.89[EUR][1000 genomes]
rs61802229	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61802230	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61802231	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61803664	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61803665	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61803671	0.84[AMR][1000 genomes]
rs61803672	0.84[AMR][1000 genomes]
rs72712846	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72712854	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs812741	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs836	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs869985	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv548058	chr1:160925455-160989614	Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160943200-160959800	Weak transcription	Pancreas	Pancrea
2	chr1:160948600-160968000	Weak transcription	Ovary	ovary
3	chr1:160952200-160953800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:160952200-160956400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:160952200-160964400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:160952200-160967000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:160952400-160952800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:160952400-160953200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:160952400-160954000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:160952400-160954000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:160952400-160956400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:160952400-160957200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:160952600-160953000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:160952600-160953000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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