The 2.0 version of rSNPBase

Variant report

Variant rs2251728
Chromosome Location chr1:160989252-160989253
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:160983600-160989400 Enhancers Placenta Placenta
2 chr1:160984200-160989400 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:160984200-160989600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr1:160984200-160989600 Weak transcription Brain Anterior Caudate brain
5 chr1:160984200-160989800 Enhancers Fetal Adrenal Gland Adrenal Gland
6 chr1:160984400-160989400 Weak transcription Primary T cells from cord blood blood
7 chr1:160984400-160989400 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr1:160984400-160989400 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:160984400-160989400 Weak transcription Fetal Kidney kidney
10 chr1:160984400-160989600 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr1:160984400-160989600 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr1:160984400-160989800 Weak transcription Primary T cells fromperipheralblood blood
13 chr1:160984400-160989800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:160984400-160989800 Weak transcription Right Ventricle heart
15 chr1:160984400-160990800 Weak transcription HSMMtube muscle
16 chr1:160984400-160991000 Weak transcription HSMM muscle
17 chr1:160985600-160989400 Enhancers Placenta Amnion Placenta Amnion
18 chr1:160986400-160989600 Enhancers Primary monocytes fromperipheralblood blood
19 chr1:160986400-160989800 Enhancers Pancreas Pancrea
20 chr1:160987400-160989400 Enhancers Stomach Mucosa stomach
21 chr1:160987600-160989400 Enhancers Adipose Nuclei Adipose
22 chr1:160987600-160990200 Enhancers Spleen Spleen
23 chr1:160987800-160989400 Flanking Active TSS Fetal Intestine Large intestine
24 chr1:160987800-160989800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:160987800-160989800 Enhancers Primary T helper cells fromperipheralblood blood
26 chr1:160987800-160989800 Enhancers Fetal Thymus thymus
27 chr1:160987800-160990400 Weak transcription Aorta Aorta
28 chr1:160987800-160990600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
29 chr1:160987800-160990800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
30 chr1:160988000-160989800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr1:160988000-160989800 Weak transcription Left Ventricle heart
32 chr1:160988000-160992000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:160988200-160989400 Flanking Active TSS Fetal Intestine Small intestine
34 chr1:160988200-160989600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:160988200-160989600 Weak transcription Hela-S3 cervix
36 chr1:160988200-160989800 Active TSS Rectal Mucosa Donor 29 rectum
37 chr1:160988200-160989800 Weak transcription Small Intestine intestine
38 chr1:160988400-160989400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:160988400-160991800 Active TSS H9 Cell Line embryonic stem cell
40 chr1:160988400-160991800 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:160988400-160991800 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
42 chr1:160988600-160989400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr1:160988600-160989400 Enhancers Liver Liver
44 chr1:160988600-160989400 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr1:160988600-160989400 Weak transcription Thymus Thymus
46 chr1:160988600-160989600 Weak transcription A549 lung
47 chr1:160988600-160989800 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:160988600-160989800 Enhancers Primary B cells from peripheral blood blood
49 chr1:160988600-160989800 Weak transcription Lung lung
50 chr1:160988600-160990000 Active TSS Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015