Variant report
| Variant | rs11853978 |
|---|---|
| Chromosome Location | chr15:59262988-59262989 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:59261168..59263634-chr15:59264405..59267081,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1613602 | 1.00[AMR][1000 genomes] |
| rs1693535 | 0.83[AFR][1000 genomes] |
| rs1693536 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2414616 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2899638 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2955703 | 1.00[AMR][1000 genomes] |
| rs392739 | 1.00[AMR][1000 genomes] |
| rs413731 | 1.00[AMR][1000 genomes] |
| rs4238332 | 1.00[AMR][1000 genomes] |
| rs4238333 | 1.00[AMR][1000 genomes] |
| rs442321 | 1.00[AMR][1000 genomes] |
| rs4444273 | 1.00[AMR][1000 genomes] |
| rs4775100 | 1.00[AMR][1000 genomes] |
| rs4775104 | 1.00[AMR][1000 genomes] |
| rs4775105 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs551943 | 1.00[AMR][1000 genomes] |
| rs571030 | 1.00[AMR][1000 genomes] |
| rs6494049 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs655312 | 1.00[AMR][1000 genomes] |
| rs7163754 | 1.00[AMR][1000 genomes] |
| rs7178664 | 1.00[AMR][1000 genomes] |
| rs7183794 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34110 | chr15:58949991-59381634 | Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 2 | nsv527307 | chr15:59103328-60018487 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 145 gene(s) | inside rSNPs | diseases |
| 3 | esv1850946 | chr15:59174539-59429160 | Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 70 gene(s) | inside rSNPs | diseases |
| 4 | nsv904271 | chr15:59249584-59393011 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
